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AT1G27060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.668
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 19815 Blast hits to 6041 proteins in 472 species: Archae - 85; Bacteria - 2553; Metazoa - 7293; Fungi - 979; Plants - 2476; Viruses - 2; Other Eukaryotes - 6427 (source: NCBI BLink).
Protein Annotations
DNASU:839595eggNOG:COG5184eggNOG:KOG1426EMBL:BT030023
EMBL:CP002684EnsemblPlants:AT1G27060EnsemblPlants:AT1G27060.1entrez:839595
Gene3D:2.130.10.30GeneID:839595Gramene:AT1G27060.1hmmpanther:PTHR22870
hmmpanther:PTHR22870:SF190HOGENOM:HOG000236375InterPro:IPR000408InterPro:IPR009091
KEGG:ath:AT1G27060OMA:MNHISEDPfam:PF00415Pfscan:PS50012
PhylomeDB:A2RVN2PRINTS:PR00633PRO:PR:A2RVN2PROSITE:PS00626
PROSITE:PS50012Proteomes:UP000006548RefSeq:NP_174026.1scanprosite:PS00626
SMR:A2RVN2STRING:3702.AT1G27060.1SUPFAM:SSF50985TAIR:AT1G27060
UniGene:At.41142UniGene:At.50938UniProt:A2RVN2
Coordinates (TAIR10) chr1:+:9395023..9396673
Molecular Weight (calculated) 40732.80 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.14
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)