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AT3G56990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo sac development arrest 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ2DeggNOG:KOG2321EMBL:AL138655EMBL:AY069919
EMBL:CP002686EnsemblPlants:AT3G56990EnsemblPlants:AT3G56990.1entrez:824866
Gene3D:2.130.10.10GeneID:824866GO:GO:0005730GO:GO:0009561
Gramene:AT3G56990.1hmmpanther:PTHR14927hmmpanther:PTHR14927:SF0HOGENOM:HOG000182967
InterPro:IPR012580InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT3G56990
KO:K14788OMA:YVEFHSQPfam:PF08159PhylomeDB:Q9M1J9
PIR:T47759Proteomes:UP000006548RefSeq:NP_191258.2SMR:Q9M1J9
STRING:3702.AT3G56990.1SUPFAM:SSF50978TAIR:AT3G56990tair10-symbols:EDA7
UniGene:At.28199UniProt:Q9M1J9
Coordinates (TAIR10) chr3:-:21088358..21091976
Molecular Weight (calculated) 79671.90 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.72
Length 711 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSYGDRLKS TSINGVKLYN VSSAPNVPTW LNPKKQRALR KNPHYMQRVE LIQELKFETA TTRIKATPDG EYLIASGIYP PQVKVYELNQ LALKFERHLD
101: SEIVDFEILD DDFSKLAFLC ADRSINLHAK YGKHHTLRIP RMGRDMTYDS WSCDLLCAAS SPDLYRINLE QGRFLSPLST QSPALNVVSR SNLHGLVACG
201: GEDGAVEFFD MRMKSSAARI NAVTHGGDAA AEVTAIEFDD SEGLQVAVGS SAGKVFIYDL RTSTPIRVKD HMYESPILNI KWQRTLNTQQ PKLITTDKHI
301: VRIWDPNTGE GMTSIEPTQG GINDICVFRG SGLMLLALDS SLIPSYFIPE LGPAPKWCSP LENLTEELEE SAQTTIYDNY KFLAMEDLEK LQLTHLIGTD
401: LLKASMHGYF INYHLYKKAL AVIEPFAFDD YLERRKQEKL EEQRTQRITK KRRLPKVNRD LAARLHGDES EEENKTAEDG EATKKVLKKK KPILTDEHFV
501: DGRFGSMFQN PDFQIDKDSY EYGVLHPVAS SKKQPSLLDE HFEAVSDDDE NSDSDASQPS DDEADDGDAT RPSKKARTPK LYEVKDERHA AAYHNRTSLA
601: KEDSLPMGER VKAIENRRGN FGGSKDIKFG PGGSREFSFK ARGSSKYKED RDDEYEDGQR NKRRGVQSLG LKSTNIRGGF RGRGGGGFRG RGGGGSRGKG
701: GRGGGRGRGR Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)