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AT5G03070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : importin alpha isoform 9
Curator
Summary (TAIR10)
Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.
Computational
Description (TAIR10)
importin alpha isoform 9 (IMPA-9); FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 6 (TAIR:AT1G02690.2); Has 2139 Blast hits to 1862 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 1001; Fungi - 275; Plants - 485; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5064eggNOG:KOG0166EMBL:AL163002EMBL:CP002688
EnsemblPlants:AT5G03070EnsemblPlants:AT5G03070.1entrez:831675Gene3D:1.25.10.10
GeneID:831675Genevisible:F4KF65GO:GO:0005643GO:GO:0005654
GO:GO:0005829GO:GO:0006607GO:GO:0008139GO:GO:0008565
Gramene:AT5G03070.1hmmpanther:PTHR23316hmmpanther:PTHR23316:SF1InParanoid:F4KF65
IntAct:F4KF65InterPro:IPR000225InterPro:IPR011989InterPro:IPR016024
InterPro:IPR024931KEGG:ath:AT5G03070OMA:AQFDIRRPaxDb:F4KF65
Pfam:F4KF65Pfam:PF00514PIR:T48328PIRSF:PIRSF005673
PRIDE:F4KF65PRO:PR:F4KF65ProteinModelPortal:F4KF65Proteomes:UP000006548
Reactome:R-ATH-5693548RefSeq:NP_195927.2SMART:SM00185SMR:F4KF65
STRING:3702.AT5G03070.1SUPFAM:SSF48371TAIR:AT5G03070tair10-symbols:IMPA-9
UniGene:At.4995UniProt:F4KF65
Coordinates (TAIR10) chr5:-:718468..721395
Molecular Weight (calculated) 56687.00 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.02
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)