AT3G18310.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:6284523..6287144 | ||||||||||||||||||||
| Molecular Weight (calculated) | 98388.40 Da | ||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||
| Length | 873 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MITRRRSPSK NPMEMITDEW GRKLCITSSP EESIGPFFSN PSDSQLLFSS PSLSPPILSI TPHLTPARFL SVSGVPPSDS SAINSSFKIS NPHDDTVRVL 101: SYNRLQFLPF PSKNSVLVFF PTGTNLDQIG FLLLSYGDSG GLQVTGSDEG DVFVATERLF SRILKILVQP VSDFGAYKCS SSSGELGYVL VYSLYSIHWY 201: CVKYDESQGK PVLRNLGCKQ FKRFVIVSAS WSPHVTGECL LLLDNGEVFV FDLSQRHCRV RGCKLKVSWE SQGKSVNKSW LGCEFGWRVG VYIVARSDAL 301: FVIVKSTEDC SVRCLLEVES LNTAGAEVFV GFAKAGSDGF RFVLASQSYV FLCDARSGVP LLKWQHDVEK PCFMDVYSLS ELGVRTFESN TSCLIIGSFW 401: NAQSQMFCFG PSPSVGKDPS SLYVWELPHN LLLPVGKCLC GDCLFREVMI KESLPEWIDW QKKSVLVLGF GVLNKYLPLG SSDQSSGFTL IRLTSSGKLE 501: AVKFRASRLK HLEVVAHKGS ACKSDEVNLL YLPDDEEYKF PRRFNYLELE YLSAHRKGML AGFLDSKMRT ESSDFKKSES FSLICHEELC KKLKICGFGK 601: GRSASSITAV FENINSPTSV FDIALRETWS SLPKEILMLA FSNYSEFADV LVDKKKQSLE FLVVPEFPQL PPFLLRNPSS RSSKWSKKEQ PGVEVVGPVV 701: PLPVLITLHE FHNGCLNSEQ EFSPEAEFYN RCNQISKATR QIANSGRHET TISLDEDRAD EMWLNSDSQE EKKTFIAYRP ITKTAESDRL QQEVTTFVSR 801: IRGCKEGDDN AVGRRGLELF DELSPVEMFF ENREVNFDKF DMKAMLTDKT FHSQWQDRSS SYQEFLSQYH LKK |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)