AT5G11310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G49730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:3606490..3608409 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 68341.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNSLFTAFRR NLLLNPNPHR NFFLHRLLSS SRRSSPLIPV EPLIQRIQSP AVPDSTCTPP QQNTVSKTDL STISNLLENT DVVPGSSLES ALDETGIEPS 101: VELVHALFDR LSSSPMLLHS VFKWAEMKPG FTLSPSLFDS VVNSLCKARE FEIAWSLVFD RVRSDEGSNL VSADTFIVLI RRYARAGMVQ QAIRAFEFAR 201: SYEPVCKSAT ELRLLEVLLD ALCKEGHVRE ASMYLERIGG TMDSNWVPSV RIFNILLNGW FRSRKLKQAE KLWEEMKAMN VKPTVVTYGT LIEGYCRMRR 301: VQIAMEVLEE MKMAEMEINF MVFNPIIDGL GEAGRLSEAL GMMERFFVCE SGPTIVTYNS LVKNFCKAGD LPGASKILKM MMTRGVDPTT TTYNHFFKYF 401: SKHNKTEEGM NLYFKLIEAG HSPDRLTYHL ILKMLCEDGK LSLAMQVNKE MKNRGIDPDL LTTTMLIHLL CRLEMLEEAF EEFDNAVRRG IIPQYITFKM 501: IDNGLRSKGM SDMAKRLSSL MSSLPHSKKL PNTYREAVDA PPDKDRRKSI LHRAEAMSDV LKGCRNPRKL VKMRGSHKKA VGEDINLIDD INERNGDAGD 601: FE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)