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AT3G15590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: DNA binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 8565 Blast hits to 4880 proteins in 211 species: Archae - 0; Bacteria - 30; Metazoa - 169; Fungi - 54; Plants - 8144; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB028619EMBL:AY102108
EMBL:BT002636EMBL:CP002686EnsemblPlants:AT3G15590EnsemblPlants:AT3G15590.1
entrez:820799GeneID:820799Genevisible:Q9LRP6GO:GO:0005739
Gramene:AT3G15590.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF26HOGENOM:HOG000237774
InParanoid:Q9LRP6InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9LRP6
KEGG:ath:AT3G15590OMA:MEIYTENPaxDb:Q9LRP6Pfam:PF01535
Pfam:PF13812Pfam:Q9LRP6PhylomeDB:Q9LRP6PRIDE:Q9LRP6
PRO:PR:Q9LRP6ProteinModelPortal:Q9LRP6Proteomes:UP000006548RefSeq:NP_188178.2
SMR:Q9LRP6STRING:3702.AT3G15590.1SUPFAM:SSF48452SwissPalm:Q9LRP6
TAIR:AT3G15590TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.70112
UniProt:Q9LRP6
Coordinates (TAIR10) chr3:-:5275568..5277658
Molecular Weight (calculated) 69398.00 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.36
Length 610 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSLSRILQR SQRYNFAPSS FGAVSKLEVS SGGDKERVFK SFGLIYSKPQ GLVRLYSARD VFSRFFGIHK LSSIADAKDK GDEVVREEEL SESEEAVPVS
101: GDVPEGVVDD DSLFEPELGS DNDDLEIEEK HSKDGGKPTK KRGQSELYES IVAYKSVKHV LEKWVKEGKD LSQAEVTLAI HNLRKRKSYA MCLQLWEWLG
201: ANTQFEFTEA NYASQLDLVA KVHSLQKAEI FLKDIPESSR GEVVYRTLLA NCVLKHHVNK AEDIFNKMKE LKFPTSVFAC NQLLLLYSMH DRKKISDVLL
301: LMERENIKPS RATYHFLINS KGLAGDITGM EKIVETIKEE GIELDPELQS ILAKYYIRAG LKERAQDLMK EIEGKGLQQT PWVCRSLLPL YADIGDSDNV
401: RRLSRFVDQN PRYDNCISAI KAWGKLKEVE EAEAVFERLV EKYKIFPMMP YFALMEIYTE NKMLAKGRDL VKRMGNAGIA IGPSTWHALV KLYIKAGEVG
501: KAELILNRAT KDNKMRPMFT TYMAILEEYA KRGDVHNTEK VFMKMKRASY AAQLMQYETV LLAYINAKTP AYGMIERMKA DNVFPNKSLA AKLAQVNPFK
601: KCPVSVLLDI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)