suba logo
AT3G26410.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.865
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : methyltransferases;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
methyltransferases;nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2'-O-methyltransferase, TRM11 (InterPro:IPR016691), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 597 Blast hits to 588 proteins in 280 species: Archae - 150; Bacteria - 5; Metazoa - 158; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1041eggNOG:KOG2671EMBL:AF360287EMBL:AP001298
EMBL:AY051043EMBL:CP002686EnsemblPlants:AT3G26410EnsemblPlants:AT3G26410.1
entrez:822245Gene3D:3.40.50.150GeneID:822245GO:GO:0003676
GO:GO:0006400GO:GO:0008168GO:GO:0080180Gramene:AT3G26410.1
hmmpanther:PTHR13370hmmpanther:PTHR13370:SF3HOGENOM:HOG000191866InterPro:IPR000241
InterPro:IPR002052InterPro:IPR016691InterPro:IPR029063KEGG:00253+2.1.1.-
KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-
KEGG:00360+2.1.1.-KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-
KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-
KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-
KEGG:00981+2.1.1.-KEGG:ath:AT3G26410KO:K15430OMA:IDYNTIH
Pfam:PF01170Pfscan:PS51627PhylomeDB:Q9LIN4PROSITE:PS00092
PROSITE:PS51627Proteomes:UP000006548RefSeq:NP_566792.1scanprosite:PS00092
STRING:3702.AT3G26410.1SUPFAM:SSF53335TAIR:AT3G26410tair10-symbols:AtTRM11
tair10-symbols:TRM11UniGene:At.20975UniGene:At.6735UniProt:Q9LIN4
Coordinates (TAIR10) chr3:-:9669508..9671273
Molecular Weight (calculated) 54641.60 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.33
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MWFLCVFYHR LLDFRKPEVE ALAELFGEEI AENESLQWRL PENHHNDTPF HFVQLSSEEI ARNIAKRSIL VKGMYELWGE GTCYEELKDS IQSYPDSRKL
101: PFLTSDSTFR ISVETFGKAL TFDEQKDRIQ SFTYIPFEGR VNLKNPDHNF FLMEMIESEE NNGLQPILQR RIFFGREVGF ADRKLLPTFQ LKSRTYLGPT
201: AMDAEMAFLM ANQAKATSGK LVYDPFVGTG SILVSAARFG AMTMGADIDI RVVRDGRGPD CNVWSNFKQY GLPMPVALLR MDNNVPPWRS GLKEIFDAII
301: CDPPYGVRAG GRKSGGRKIL RGTVDPYTVP DDKRTDHIPS TGAYSLVECV HDLLHLAARM LVMKGRLVFF FPVLRDETGS EVKFPEHPCF KLVAVSEQIL
401: SSRYSRVLLT MVKVEPYSEE VEEAARLMHL EFRENHLKWL EDGNIHSSIF KPIDSSQIDT DSKAFKDPKP KYRGKYV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)