AT5G58210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 3902 Blast hits to 1819 proteins in 361 species: Archae - 22; Bacteria - 590; Metazoa - 772; Fungi - 625; Plants - 211; Viruses - 44; Other Eukaryotes - 1638 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:23552427..23554045 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40850.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.74 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 380 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MILKQLKQFT LSATRRNAVF KTDVKRLARF YGSPAVCESL TTSKIPKRLS KDDRRALVES FVNEYRATNA GRFPSLDATH KQVGGSYYIV RDIFQELKLK 101: PKAHMPIVAK ALSEVSSSVP GDASSHSSPA PVPTVEAKAL SEVSPSVPAD ASSHLSPSPV PIVEAKALSE VSPSVPADTS SHFSPAPVPI VEAEALSVVS 201: PSVPADTSSH FSPAPVPIVE AKTLSEVSPS VPDDASSHFS PVVVEPEFQA GSVDIEIGSE QRPDIIDTSH SNSDDESNFQ GNNLVITAKD DKRETEATQG 301: IENSETDEER NLTHLGNQES KADHLEGADV SADVVPTETR QISETGAGEV KETETGEVKE RSSSWSNIMS FAKEFANFWR |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)