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AT4G02390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : poly(ADP-ribose) polymerase
Curator
Summary (TAIR10)
Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .
Computational
Description (TAIR10)
poly(ADP-ribose) polymerase (PP); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, nucleic acid binding; INVOLVED IN: protein amino acid ADP-ribosylation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory domain (InterPro:IPR004102), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: poly(ADP-ribose) polymerase 2 (TAIR:AT2G31320.1); Has 1052 Blast hits to 1033 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 556; Fungi - 107; Plants - 166; Viruses - 5; Other Eukaryotes - 203 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G02390-MONOMERBioGrid:13340EC:2.4.2.30eggNOG:ENOG410XP18
eggNOG:KOG1037EMBL:AF069298EMBL:AL161494EMBL:CP002687
EMBL:Z48243EnsemblPlants:AT4G02390EnsemblPlants:AT4G02390.1entrez:828049
Gene3D:1.10.720.30Gene3D:1.20.142.10Gene3D:2.20.140.10Gene3D:3.90.228.10
GeneID:828049Genevisible:Q11207GO:GO:0003677GO:GO:0003910
GO:GO:0003950GO:GO:0005634GO:GO:0005737GO:GO:0006273
GO:GO:0006303GO:GO:0006471GO:GO:0051103Gramene:AT4G02390.1
hmmpanther:PTHR10459hmmpanther:PTHR10459:SF64HOGENOM:HOG000173055InParanoid:Q11207
InterPro:IPR003034InterPro:IPR004102InterPro:IPR008893InterPro:IPR012317
KEGG:ath:AT4G02390KO:K10798ncoils:CoilOMA:ACSGDLN
PaxDb:Q11207Pfam:PF00644Pfam:PF02037Pfam:PF02877
Pfam:PF05406Pfam:Q11207Pfscan:PS50800Pfscan:PS51059
Pfscan:PS51060PhylomeDB:Q11207PIR:T01311PRIDE:Q11207
PRO:PR:Q11207PROSITE:PS50800PROSITE:PS51059PROSITE:PS51060
ProteinModelPortal:Q11207Proteomes:UP000006548RefSeq:NP_192148.2SMART:SM00513
SMART:SM00773SMR:Q11207STRING:3702.AT4G02390.1SUPFAM:0052256
SUPFAM:SSF142921SUPFAM:SSF47587SUPFAM:SSF56399SUPFAM:SSF68906
TAIR:AT4G02390tair10-symbols:APPtair10-symbols:ATPARP1tair10-symbols:PARP1
tair10-symbols:PPUniGene:At.92UniProt:Q11207
Coordinates (TAIR10) chr4:+:1050104..1053960
Molecular Weight (calculated) 72179.60 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.60
Length 637 amino acids
Sequence (TAIR10)
(BLAST)
001: MANKLKVDEL RLKLAERGLS TTGVKAVLVE RLEEAIAEDT KKEESKSKRK RNSSNDTYES NKLIAIGEFR GMIVKELREE AIKRGLDTTG TKKDLLERLC
101: NDANNVSNAP VKSSNGTDEA EDDNNGFEEE KKEEKIVTAT KKGAAVLDQW IPDEIKSQYH VLQRGDDVYD AILNQTNVRD NNNKFFVLQV LESDSKKTYM
201: VYTRWGRVGV KGQSKLDGPY DSWDRAIEIF TNKFNDKTKN YWSDRKEFIP HPKSYTWLEM DYGKEENDSP VNNDIPSSSS EVKPEQSKLD TRVAKFISLI
301: CNVSMMAQHM MEIGYNANKL PLGKISKSTI SKGYEVLKRI SEVIDRYDRT RLEELSGEFY TVIPHDFGFK KMSQFVIDTP QKLKQKIEMV EALGEIELAT
401: KLLSVDPGLQ DDPLYYHYQQ LNCGLTPVGN DSEEFSMVAN YMENTHAKTH SGYTVEIAQL FRASRAVEAD RFQQFSSSKN RMLLWHGSRL TNWAGILSQG
501: LRIAPPEAPV TGYMFGKGVY FADMFSKSAN YCYANTGAND GVLLLCEVAL GDMNELLYSD YNADNLPPGK LSTKGVGKTA PNPSEAQTLE DGVVVPLGKP
601: VERSCSKGML LYNEYIVYNV EQIKMRYVIQ VKFNYKH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)