AT4G22960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.911 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF544) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF544) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF544 (InterPro:IPR007518); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF544) (TAIR:AT4G11860.1); Has 737 Blast hits to 425 proteins in 174 species: Archae - 0; Bacteria - 23; Metazoa - 282; Fungi - 261; Plants - 75; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12030121..12033105 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58702.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.02 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||
| Length | 524 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIDNSRPPP DEIFYKTKKI LYRGQRCNII LQDKNGPCPL IAICNVLILK HGINLDTYNS QVSEEDLVNL VIDVLDDTDE YIDIGLIRKL ACGINVDLKF 101: ERITDFELTP ELDIFRSLKI PLYHGWLVDP TDVEIVAAIG GRSRDELEIA LTTLDTQTVS SVDFAASAEH LGLGKGDIEE DEMVSKALAL SEMEASLKGS 201: FDTQRVVSGS LDVNQISEDD TLVTSVDIEA GCATTLGSNI CQLSKFDDQF SSTESEDCDV GNKTNVGEEV SSTELGDETF GNVETENSSK MTDVLISVEK 301: TNLESTKNDI ISEAITLVNA DLSEKSQDDD VSQSVYEVQS LLGQSSPEGK GTKGLTQEEG ELIKGFFEES VTQLTWHGLF TLEDDLKEWE LCVLFRNNHF 401: ATMLQHEERL YTLVTYEGYQ MQQDLVWERF NKIDGDSAFF TGYFTKFIFK DQQHAISKTE NSISRIKSEN MDTTEFDRLL ALELEQNDWA GETGSEVPII 501: SYKHISSSLQ ELKEFLIWQN EQSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)