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AT5G66130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At5g66130
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RADIATION SENSITIVE 17
Curator
Summary (TAIR10)
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational
Description (TAIR10)
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21987eggNOG:COG0470eggNOG:KOG1970EMBL:AB011474
EMBL:AB030250EMBL:CP002688EnsemblPlants:AT5G66130EnsemblPlants:AT5G66130.1
entrez:836745Gene3D:3.40.50.300GeneID:836745Genevisible:Q9MBA3
GO:GO:0005524GO:GO:0005634GO:GO:0006281GO:GO:0006282
GO:GO:0007049Gramene:AT5G66130.1hmmpanther:PTHR12172hmmpanther:PTHR12172:SF0
HOGENOM:HOG000006290InParanoid:Q9MBA3InterPro:IPR004582InterPro:IPR027417
KEGG:ath:AT5G66130KO:K06662MINT:MINT-8067132OMA:FPAQMCL
PANTHER:PTHR12172PaxDb:Q9MBA3Pfam:PF03215Pfam:Q9MBA3
PhylomeDB:Q9MBA3PRIDE:Q9MBA3PRO:PR:Q9MBA3ProteinModelPortal:Q9MBA3
Proteomes:UP000006548RefSeq:NP_201414.1SMR:Q9MBA3STRING:3702.AT5G66130.1
SUPFAM:SSF52540TAIR:AT5G66130tair10-symbols:ATRAD17tair10-symbols:RAD17
UniGene:At.24248UniGene:At.467UniProt:Q9MBA3
Coordinates (TAIR10) chr5:+:26434236..26437091
Molecular Weight (calculated) 66822.60 Da
IEP (calculated) 6.25
GRAVY (calculated) -0.52
Length 599 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKKKLSLED EDDDRSYNLR SSRSNAKSKP RSSAGTATNP RASKRARLSG ASATQEDSSL VDKIRLSFED FDEALSGFKV SSGYERSKNT DLWVDKYRPR
101: TLEELSVHKK KVDEVKLWFQ ESLDFLKNGL RNNVLLVTGQ AGVGKSATIH LITSILGVTV HEWNAPIPTI WQEHVHNTSS GLKYTSKLDE FENFVESTRK
201: YGVMASSSTD GIKAPVVLLI DDLPLANGRH AFERLQNCLL LLVKSTQIPT VILITDHNNA DSSDQTARRM EDTQSSLERA GALKVAFNPI TKNSIKKVLQ
301: RICREEHCKV TTMEIDQMAT ASGGDIRHAI TSLQLFSVKP ELNHTKIKSP RPGMEDNYHG NEQTMYSGLD SGISSCFGRD ETLSLFHALG KFLHNKRETD
401: NVIISECSSS LVHDEFARLP LKMDAPEKVL SQAHGQAGRV VDFLHENVLD FVSDGAIEDA WCVSSYLADA DLLLADIRGK MSGHNNTEDV PQSAGASVAV
501: RGVLYGNKQP CSSRWHVIRK PKLWQVEQSS IQTKKNLREQ RNISYEGSRV ADISVMATEY SPVLKWLSYR ASPDAFPGMG EETDEEDSDI SEDDEIQDW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)