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AT1G09800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pseudouridine synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 10187 Blast hits to 8452 proteins in 2593 species: Archae - 98; Bacteria - 6891; Metazoa - 134; Fungi - 4; Plants - 112; Viruses - 0; Other Eukaryotes - 2948 (source: NCBI BLink).
Protein Annotations
EC:5.4.99.-eggNOG:COG0101eggNOG:KOG4393EMBL:CP002684
EnsemblPlants:AT1G09800EnsemblPlants:AT1G09800.1entrez:837510Gene3D:3.30.70.580
Gene3D:3.30.70.660GeneID:837510GO:GO:0001522GO:GO:0003723
GO:GO:0008033GO:GO:0009982Gramene:AT1G09800.1HAMAP:MF_00171
hmmpanther:PTHR11142hmmpanther:PTHR11142:SF1InParanoid:F4I2L0InterPro:IPR001406
InterPro:IPR020094InterPro:IPR020095InterPro:IPR020097InterPro:IPR020103
iPTMnet:F4I2L0KEGG:ath:AT1G09800KO:K06173OMA:VGFGKRR
PANTHER:PTHR11142PaxDb:F4I2L0Pfam:PF01416PRIDE:F4I2L0
ProteinModelPortal:F4I2L0Proteomes:UP000006548RefSeq:NP_172451.2SMR:F4I2L0
STRING:3702.AT1G09800.1SUPFAM:SSF55120TAIR:AT1G09800UniGene:At.477
UniGene:At.49869UniProt:F4I2L0
Coordinates (TAIR10) chr1:-:3177121..3180336
Molecular Weight (calculated) 41547.30 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.42
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDNLKHPLD CTASEESLER LSKVARIEGF SDEESEEQQG LADLESMNPV NPRVQRYLVA IEYIGTRFSG SQQQAKDRTV VGVLQEAFHK FIGQPVKIFC
101: SSRTDAGVHA LSNVCHVDVE RISKRKPGEV LPPHEPGVVQ RAVNHFLQRK DGDVMVIDVR CVPSNYHARY KAQERTYFYR LLSGSDPLSI LEKDRCWHVP
201: EELNLRFMQE ACRVLVGSHD FSSFRAAGCQ AKSPMRSLDE LNITEVPSTP YFPSITERTL SNLNNGDPLA CSNQPKSETA GVTTNVGEVE GSTEGDSFGR
301: RRRHRCYVVT ARSRGFLYHQ VRLIVGALKC VGTGELTVSD VERILEAKTV SAAKPMAPAS GLYLARVRYE FP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)