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AT3G58270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1); Has 1579 Blast hits to 1429 proteins in 196 species: Archae - 9; Bacteria - 32; Metazoa - 401; Fungi - 136; Plants - 831; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G58270-MONOMERBioCyc:ARA:GQT-984-MONOMEReggNOG:ENOG410XQV8eggNOG:KOG1987
EMBL:AL137081EMBL:BT022007EMBL:CP002686EnsemblPlants:AT3G58270
EnsemblPlants:AT3G58270.1EnsemblPlants:AT3G58270.2entrez:824996Gene3D:2.60.210.10
GeneID:824996Gramene:AT3G58270.1Gramene:AT3G58270.2HOGENOM:HOG000064658
InParanoid:Q9M2I9InterPro:IPR002083InterPro:IPR007942InterPro:IPR008974
KEGG:ath:AT3G58270ncoils:CoilOMA:TRVHEIEPaxDb:Q9M2I9
Pfam:PF00917Pfam:PF05278Pfam:Q9M2I9Pfscan:PS50144
PhylomeDB:Q9M2I9PIR:T45987PRIDE:Q9M2I9PRO:PR:Q9M2I9
PROSITE:PS50144ProteinModelPortal:Q9M2I9Proteomes:UP000006548RefSeq:NP_001030883.1
RefSeq:NP_191386.1SMART:SM00061STRING:3702.AT3G58270.1SUPFAM:SSF49599
TAIR:AT3G58270UniGene:At.34744UniProt:Q9M2I9
Coordinates (TAIR10) chr3:-:21576033..21577655
Molecular Weight (calculated) 38584.90 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.52
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKEVDNKFT WVIKNFSSQQ SRKNYSDEFF VDGCKWRLLA FPKGNGVEKL SLYLAVAGSE FLPDGWRRHA YFHFSVVNQL SDELSQARET KNWFDASTSD
101: WGFTSMLSLK KLHDKDGGFL VNGELKIVVD VSVLEVIGKL DVPVESEETT TKALSELEEN DVPEESEETT KALSKVDEND GAESNDSLKE ASSVKESMDV
201: NGFRVLPSQV ETVSCIFERH PDIASEFGPK NQHLRSAYMN VLLSLIKTMC QSTQELSKDD LSDADAALAY LTDAGLNLNW LEEKLEEVSE KKENEEAGET
301: RVHEIEEELK ELKLKCSNLE AQLEKEKADV SVARAPFSFD DIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)