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AT3G53710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARF-GAP domain 6
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
ARF-GAP domain 6 (AGD6); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 7 (TAIR:AT2G37550.2); Has 4063 Blast hits to 3866 proteins in 268 species: Archae - 0; Bacteria - 51; Metazoa - 1999; Fungi - 732; Plants - 571; Viruses - 0; Other Eukaryotes - 710 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0704EMBL:AF184146EMBL:AL132960
EMBL:BT030393EMBL:CP002686EnsemblPlants:AT3G53710EnsemblPlants:AT3G53710.1
EnsemblPlants:AT3G53710.2entrez:824538GeneID:824538Genevisible:Q9M354
GO:GO:0005096GO:GO:0005634GO:GO:0005829GO:GO:0046872
Gramene:AT3G53710.1Gramene:AT3G53710.2hmmpanther:PTHR23180hmmpanther:PTHR23180:SF293
HOGENOM:HOG000239963InParanoid:Q9M354InterPro:IPR001164iPTMnet:Q9M354
KEGG:ath:AT3G53710KO:K12492OMA:GHYNNSQPaxDb:Q9M354
Pfam:PF01412Pfam:Q9M354Pfscan:PS50115PhylomeDB:Q9M354
PIR:T45911PRIDE:Q9M354PRINTS:PR00405PRO:PR:Q9M354
PROSITE:PS50115ProteinModelPortal:Q9M354Proteomes:UP000006548Reactome:R-ATH-199997
RefSeq:NP_001030854.1RefSeq:NP_190939.1SMART:SM00105SMR:Q9M354
STRING:3702.AT3G53710.1SUPFAM:SSF57863TAIR:AT3G53710tair10-symbols:AGD6
UniGene:At.48765UniProt:Q9M354
Coordinates (TAIR10) chr3:-:19903730..19905419
Molecular Weight (calculated) 49726.50 Da
IEP (calculated) 7.28
GRAVY (calculated) -0.94
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATRQLRTL QSQPENKVCV DCAQKNPQWA SVSYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSAIQIK KMEAGGNERL NKFFAQYGIA KETDIISKYN
101: SNAASVYRDR IQALAEGRPW NDPPVVKEAN KKPPLAQGGY GNNNNNNNGG WDSWDNDDSY KSDMRRNQSA NDFRASGNRE GAHVKSKSSE DIYTRSQLEA
201: SAAGKESFFA RRMAENESKP EGLPPSQGGK YVGFGSSSAP PPRNNQQDDV FSVVSQGFGR LSLVAASAAQ SAASVVQTGT KEFTSKVKEG GYDHKVSETV
301: NVVANKTTEI GHRTWGIMKG VMAMATQKVE EFTKEGSTSW NQQSENEGNG YYQNFGNGNK AANSSVGGGR PQSSSTSGHY NNSQNSNSWD SWGENENKKT
401: EAVAPKGSSA SNDDDGWTGW DDHDAKDDGF DGHYQSAGDK KSAGHNGKSD TAWTGGGFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)