AT1G05350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.628 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : NAD(P)-binding Rossmann-fold superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity, cofactor binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SUMO-activating enzyme 2 (TAIR:AT2G21470.1); Has 12729 Blast hits to 12531 proteins in 2437 species: Archae - 211; Bacteria - 8204; Metazoa - 1010; Fungi - 713; Plants - 367; Viruses - 0; Other Eukaryotes - 2224 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1560891..1564005 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47022.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.31 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVGFKALLD DLDVLEKSLS DPALINKLRS HVENLATLSK CNPHRRSKVK ELSSEVVDSN PYSRLMALQR MGIVDNYERI REFSVAIVGI GGVGSVAAEM 101: LTRCGIGRLL LYDYDTVELA NMNRLFFRPD QVGMTKTDAA VQTLAEINPD VVLESFTMNI TTVQGFETFT SSLTNKSFCP SKEGGSGVDL VLSCVDNYEA 201: RMAVNQACNE LRQTWMESGV SEDAVSGHIQ LLVPGETACF ACAPPLVVAS GIDERTLKRE GVCAASLPTT MGVVAGLLVQ NSLKFLLNFG EVSPYLGYNS 301: LKDFFPTMKM RPNPQCSNVA CLERQKEYML AKPERDAAAK AKMEADASTT IDEGPLHDDN EWNISVVDDE NEKDTTKAAS SSDTLPEGLT RELPVADEYE 401: KAIAIASGSG ETEEEDDLED LKKQLEALNA A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)