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AT5G23490.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08440.1); Has 202 Blast hits to 197 proteins in 48 species: Archae - 0; Bacteria - 13; Metazoa - 25; Fungi - 9; Plants - 109; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIQSeggNOG:ENOG4110MDMEMBL:CP002688EnsemblPlants:AT5G23490
EnsemblPlants:AT5G23490.1entrez:832415GeneID:832415Gramene:AT5G23490.1
hmmpanther:PTHR31149hmmpanther:PTHR31149:SF6InParanoid:F4KCX5KEGG:ath:AT5G23490
ncoils:CoilOMA:DVNHSNFPaxDb:F4KCX5PRIDE:F4KCX5
ProteinModelPortal:F4KCX5Proteomes:UP000006548RefSeq:NP_197740.2TAIR:AT5G23490
UniGene:At.47222UniProt:F4KCX5
Coordinates (TAIR10) chr5:+:7919831..7926499
Molecular Weight (calculated) 81120.10 Da
IEP (calculated) 4.81
GRAVY (calculated) -0.58
Length 729 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGHEERLA ERFSGLGFED SSLLPENEFK NDNLFQVIKA VEAAETTIKE QVEENSRLKA ELQRSALELA KYKSDESLPQ TSNIGDHTNS TTVSRLVHQP
101: VDWKPVVIKA SDADSSGLLV VHPHVNANGE EATVSNRFES HSEETISNGT VKRAIDGTGP SQFDSSISPM RMRLEGEHDA HFSSSTHGSM PVGEVNHSGN
201: AWKQDLIHKV QEQEQEISQL RRYLTDCSVK EAQIRNEKYV LEKRIAYMRL AFDQQQQDLV DASSKALSYR QEIIEENIRL TYALQATQQE RSTFVSYLLP
301: LLSEYSLQPQ VSDAQSIVSN VKVLFKHLQE KLLLTETKLK ESEYQLAPWQ SDVNHSNDSP LAPSRSAGVA LTHSTKDSMY SHDHTAIDWN LERQQQDEPG
401: SSAVRNYHLD DSSTFSPLEN SQSAAFEMHV QPGTSVDESP AHKKVDETPP KHVQFLEPIS KTVVDDAQNP SYGSAFDDPS SSNSPLLSPV FEEPSSSFSE
501: GGDDDPLPGI EDLQISGEPY PGHELQACGY SINGTTSCNF EWVCHLEDGS VNYIDGAKQP NYLVTADDVD LYLAIEVQPL DDRNRKGELV KVFANDNRKI
601: ACHPDMQSNI EKTLHTGHAS YKVSLAVGFV DIWEAATLSI KREGYSIKCI SDLTIAEKFS ASTTVTIPFG QPAELVIIGS DGSEHSLRAD NGSPDLIGSR
701: DEIVLTLRLF IKRALQRKKG KKRVFLFNK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)