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AT5G04920.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : EAP30/Vps36 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EAP30/Vps36 family protein; CONTAINS InterPro DOMAIN/s: EAP30 (InterPro:IPR007286), Vacuolar protein sorting protein, Vps36 (InterPro:IPR021648); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:15653eggNOG:ENOG410XR74eggNOG:KOG2760EMBL:AB005245
EMBL:AK228715EMBL:AY072089EMBL:AY096570EMBL:CP002688
EnsemblPlants:AT5G04920EnsemblPlants:AT5G04920.1entrez:830374Gene3D:1.10.10.10
GeneID:830374Genevisible:Q9FF81GO:GO:0000814GO:GO:0015031
GO:GO:0032266Gramene:AT5G04920.1hmmpanther:PTHR13128hmmpanther:PTHR13128:SF12
HOGENOM:HOG000006822InParanoid:Q9FF81IntAct:Q9FF81InterPro:IPR007286
InterPro:IPR011991InterPro:IPR011993InterPro:IPR021648iPTMnet:Q9FF81
KEGG:ath:AT5G04920KO:K12190OMA:CWRGRAWPaxDb:Q9FF81
Pfam:PF04157Pfam:PF11605Pfam:Q9FF81Pfscan:PS51495
PhylomeDB:Q9FF81PRIDE:Q9FF81PRO:PR:Q9FF81PROSITE:PS51495
ProteinModelPortal:Q9FF81Proteomes:UP000006548Reactome:R-ATH-917729RefSeq:NP_196112.1
SMR:Q9FF81STRING:3702.AT5G04920.1SUPFAM:SSF46785SUPFAM:SSF50729
TAIR:AT5G04920UniGene:At.42973UniProt:Q9FF81
Coordinates (TAIR10) chr5:-:1439172..1441545
Molecular Weight (calculated) 49036.60 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.28
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MASGSSSIAI GGLFENAEVT TSGRPVLRRN EVECFLLSSI DIDSEDDPPR FTALRSGNLI LTTHRLIWIP SQSNESVPSS IPLSAVTHIY SHKKSIKSMF
101: HSPRIRFQAD PGSIVVTIVF RGKGDFDGFL SKLWECWRGR AWEEEEKSES ETSKSGSGTV AQGLYGNDGT VRMVGLAGIL RKEQEQWEST DKSLQDAFQD
201: LNALMSKAKE MVSLAEKMRQ KLLSAPSSQN GSTDDEEMGS KEEMQQWMLS VGIISPVTKE SAGALYHQEL SRQLADFVRI PLEKAGGMIS LTDMYYHFNR
301: ARGTELISPD DLWQACTLWE KFDVPVMLRK FDSGVMVIQN KSHSDEEVMS RIRMLVTKTE TLRVGVTASD AALTLKIAPA MAKEHLLSAE TKGLLCRDMS
401: PDGLRFYFNL FPEIDPTNLH IVKEFGTYGE WIKATSLLSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)