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AT1G13000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.969
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF707)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF707); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT3G26440.2); Has 334 Blast hits to 332 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 306; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
DNASU:837858eggNOG:ENOG410IJW1eggNOG:ENOG4111F1EEMBL:AY072111
EMBL:AY096606EMBL:CP002684EnsemblPlants:AT1G13000EnsemblPlants:AT1G13000.1
EnsemblPlants:AT1G13000.2entrez:837858GeneID:837858GO:GO:0016021
GO:GO:0016757Gramene:AT1G13000.1Gramene:AT1G13000.2hmmpanther:PTHR31210
hmmpanther:PTHR31210:SF7HOGENOM:HOG000242272InterPro:IPR007877KEGG:ath:AT1G13000
OMA:FDANEYIPfam:PF05212PhylomeDB:Q8VYF6Proteomes:UP000006548
RefSeq:NP_001031034.1RefSeq:NP_172760.2TAIR:AT1G13000TMHMM:TMhelix
UniGene:At.42051UniProt:Q8VYF6
Coordinates (TAIR10) chr1:-:4436402..4438693
Molecular Weight (calculated) 45852.70 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.43
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRTDNSNR CSNGKKPNDG MRLIIATFVG IVVGFFLGIS FPTLSLTKLN FPSGILPSVD ITYVEDETPE TSSETLLHTW SSRGPLHGAN SSDAPHWKIW
101: VPSNPRGAEM LTPGIIAPES DYYLRRLWGL PEEDVPVKPK YLIAFTVGFG QKVNVDACVK KFSKDFTIVL FHYDGRTTEW EELEWSKRAI HVSVPKQTKW
201: WYAKRFLHPD IVAPYDYVFI WDEDLGLENF DVEEYIRLIK KHGLEISQPA VESKKKITWE ITKRKTKGEV HKDAKEKPGR CNDPHLPPCA AFIEIMAPVF
301: SRDAWRCVWH MIQNDLVHGW GLDFALRKCV EPAHEKIGVV DSQWIIHQSL PSLGSQGEAQ DGKAGWQGVR DRCKREWTMF QSRMASSEKQ YLKEIANSTI
401: H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)