suba logo
AT4G24940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SUMO-activating enzyme 1A
Curator
Summary (TAIR10)
Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.
Computational
Description (TAIR10)
SUMO-activating enzyme 1A (SAE1A); CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: SUMO-activating enzyme 1B (TAIR:AT5G50580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13884eggNOG:COG0476eggNOG:KOG2014EMBL:AF510523
EMBL:AL035523EMBL:AL161562EMBL:AY072375EMBL:AY086568
EMBL:BT000094EMBL:CP002687EnsemblPlants:AT4G24940EnsemblPlants:AT4G24940.1
entrez:828596Gene3D:3.40.50.720GeneID:828596Genevisible:Q8VY78
GO:GO:0005634GO:GO:0005829GO:GO:0007346GO:GO:0016925
GO:GO:0019948Gramene:AT4G24940.1hmmpanther:PTHR10953HOGENOM:HOG000172217
InParanoid:Q8VY78InterPro:IPR000594InterPro:IPR016040iPTMnet:Q8VY78
KEGG:ath:AT4G24940KO:K10684OMA:SSDTYGEPaxDb:Q8VY78
Pfam:PF00899Pfam:Q8VY78PhylomeDB:Q8VY78PIR:T05515
PRIDE:Q8VY78PRO:PR:Q8VY78ProteinModelPortal:Q8VY78Proteomes:UP000006548
Reactome:R-ATH-3065676Reactome:R-ATH-3065678RefSeq:NP_567712.1SMR:Q8VY78
STRING:3702.AT4G24940.1SUPFAM:SSF69572TAIR:AT4G24940tair10-symbols:AT-SAE1-1
tair10-symbols:ATSAE1Atair10-symbols:SAE1AUniGene:At.2640UniGene:At.69107
UniPathway:UPA00886UniProt:Q8VY78
Coordinates (TAIR10) chr4:+:12823651..12825971
Molecular Weight (calculated) 36125.40 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.20
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGEELTEQE TALYDRQIRV WGANAQRRLT KAHILVSGIK GTVAEFCKNI VLAGVGSVTL MDDRLANMEA LNANFLIPPD ENVYSGKTVA EICSDSLKDF
101: NPMVRVSVEK GDLSMLGTDF FEQFDVVVIG YGSRATKKYV NEKCRKLKKR VAFYTVDCRD SCGEIFVDLQ DYKYTKKKLE EMVECELNFP SFQEAISVPW
201: KPIPRRTAKL YFAMRVIEVF EESEGRKHGE CSLLDLARVL EIKKQLCEAN SVSESHIPDI LLERLITGTT EFPPVCAIVG GILAQEVIKA VSGKGDPLKN
301: FFYYDGEDGK GVMEDISDSF TS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)