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AT5G64320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G74580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB008268EMBL:CP002688
EnsemblPlants:AT5G64320EnsemblPlants:AT5G64320.1entrez:836553Gene3D:1.25.40.10
GeneID:836553GO:GO:0005739Gramene:AT5G64320.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF905HOGENOM:HOG000115649InParanoid:Q9FMF6InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT5G64320OMA:TWYASSHPaxDb:Q9FMF6
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9FMF6
Pfscan:PS51375PhylomeDB:Q9FMF6PRIDE:Q9FMF6PRO:PR:Q9FMF6
PROSITE:PS51375ProteinModelPortal:Q9FMF6Proteomes:UP000006548RefSeq:NP_201237.1
SMR:Q9FMF6STRING:3702.AT5G64320.1SUPFAM:SSF81901TAIR:AT5G64320
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.28962UniProt:Q9FMF6
Coordinates (TAIR10) chr5:-:25723247..25725439
Molecular Weight (calculated) 81962.60 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.01
Length 730 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMLARSKLA LDVSRRSQSL QRICYYASLS SRFSGGGGDD GGGSSPEIGG TDSANEWEKL LKPFDLDSLR NSFHKITPFQ LYKLLELPLN VSTSMELFSW
101: TGSQNGYRHS FDVYQVLIGK LGANGEFKTI DRLLIQMKDE GIVFKESLFI SIMRDYDKAG FPGQTTRLML EMRNVYSCEP TFKSYNVVLE ILVSGNCHKV
201: AANVFYDMLS RKIPPTLFTF GVVMKAFCAV NEIDSALSLL RDMTKHGCVP NSVIYQTLIH SLSKCNRVNE ALQLLEEMFL MGCVPDAETF NDVILGLCKF
301: DRINEAAKMV NRMLIRGFAP DDITYGYLMN GLCKIGRVDA AKDLFYRIPK PEIVIFNTLI HGFVTHGRLD DAKAVLSDMV TSYGIVPDVC TYNSLIYGYW
401: KEGLVGLALE VLHDMRNKGC KPNVYSYTIL VDGFCKLGKI DEAYNVLNEM SADGLKPNTV GFNCLISAFC KEHRIPEAVE IFREMPRKGC KPDVYTFNSL
501: ISGLCEVDEI KHALWLLRDM ISEGVVANTV TYNTLINAFL RRGEIKEARK LVNEMVFQGS PLDEITYNSL IKGLCRAGEV DKARSLFEKM LRDGHAPSNI
601: SCNILINGLC RSGMVEEAVE FQKEMVLRGS TPDIVTFNSL INGLCRAGRI EDGLTMFRKL QAEGIPPDTV TFNTLMSWLC KGGFVYDACL LLDEGIEDGF
701: VPNHRTWSIL LQSIIPQETL DRRRFYNAAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)