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AT2G39230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LATERAL ORGAN JUNCTION
Curator
Summary (TAIR10)
Encodes a pentatricopeptide protein (LOJ) that is specifically expressed in lateral organ junctions.
Computational
Description (TAIR10)
LATERAL ORGAN JUNCTION (LOJ); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G54980.1); Has 63662 Blast hits to 14403 proteins in 306 species: Archae - 7; Bacteria - 57; Metazoa - 980; Fungi - 1296; Plants - 59204; Viruses - 0; Other Eukaryotes - 2118 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC004697EMBL:CP002685
EnsemblPlants:AT2G39230EnsemblPlants:AT2G39230.1entrez:818508Gene3D:1.25.40.10
GeneID:818508Genevisible:O80958GO:GO:0005739Gramene:AT2G39230.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF406HOGENOM:HOG000082982InParanoid:O80958
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G39230OMA:CKNMEME
PaxDb:O80958Pfam:O80958Pfam:PF01535Pfam:PF12854
Pfam:PF13041Pfscan:PS51375PhylomeDB:O80958PIR:T02579
PRIDE:O80958PRO:PR:O80958PROSITE:PS51375ProteinModelPortal:O80958
Proteomes:UP000006548RefSeq:NP_181456.1SMR:O80958STRING:3702.AT2G39230.1
SUPFAM:SSF48452SUPFAM:SSF81901TAIR:AT2G39230tair10-symbols:LOJ
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.66332UniProt:O80958
Coordinates (TAIR10) chr2:+:16381647..16384250
Molecular Weight (calculated) 97674.80 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.10
Length 867 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTFMVSKRF RPPIFLHRFI NPKPISSQTR FLHPPDNQSR DISDSTTETI STLEFPHKTS VPNHSPLTST SETENHVDDA RVIEVLLGRR NDPVSALQYC
101: NWVKPLHRLC EGGDVFWVLI HILLSSIHTH DRASNLLVMF VSNNPTLIPN VMVNNLVDSS KRFGFELTPR AFNYLLNAYI RNKRMDYAVD CFGLMVDRKV
201: VPFVPYVNNV LSSLVRSNLI DEAKEIYNKM VLIGVAGDNV TTQLLMRASL RERKPEEAVK IFRRVMSRGA EPDGLLFSLA VQAACKTPDL VMALDLLREM
301: RGKLGVPASQ ETYTSVIVAF VKEGNMEEAV RVMDEMVGFG IPMSVIAATS LVNGYCKGNE LGKALDLFNR MEEEGLAPDK VMFSVMVEWF CKNMEMEKAI
401: EFYMRMKSVR IAPSSVLVHT MIQGCLKAES PEAALEIFND SFESWIAHGF MCNKIFLLFC KQGKVDAATS FLKMMEQKGI EPNVVFYNNM MLAHCRMKNM
501: DLARSIFSEM LEKGLEPNNF TYSILIDGFF KNKDEQNAWD VINQMNASNF EANEVIYNTI INGLCKVGQT SKAKEMLQNL IKEKRYSMSC TSYNSIIDGF
601: VKVGDTDSAV ETYREMSENG KSPNVVTFTS LINGFCKSNR MDLALEMTHE MKSMELKLDL PAYGALIDGF CKKNDMKTAY TLFSELPELG LMPNVSVYNS
701: LISGFRNLGK MDAAIDLYKK MVNDGISCDL FTYTTMIDGL LKDGNINLAS DLYSELLDLG IVPDEILHMV LVNGLSKKGQ FLKASKMLEE MKKKDVTPNV
801: LLYSTVIAGH HREGNLNEAF RLHDEMLEKG IVHDDTVFNL LVSGRVEKPP AASKISSLAS PEMRSSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)