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AT2G17033.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2021 Blast hits to 1571 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G17033EnsemblPlants:AT2G17033.1entrez:816207hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF537Pfam:PF01535Pfscan:PS50828Pfscan:PS51375
SUPFAM:0053808TIGRfam:TIGR00756
Coordinates (TAIR10) chr2:+:7401205..7403207
Molecular Weight (calculated) 56473.30 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.15
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALIQTIHG VVVTRTLTLV YPSTFTSRHK ALNQMTSSSN SGLRRFLFTP PQRLSQGICY WGAELSNNVS WTYKTKMVVR SKAGAVPLMK HGDRFLSSLS
101: SPALAGDPSA INRHIKKFVA ASPKSVALNV LSHLLSDQTS HPHLSFFALS LYSEITEASW FDWNPKLIAE LIALLNKQER FDESETLLST AVSRLKSNER
201: DFTLFLCNLV ESNSKQGSIQ GFSEASFRLR EIIQRSSSVY VKTQAYKSMV SGLCNMDQPH DAERVIEEMR MEKIKPGLFE YKSVLYGYGR LGLFDDMNRV
301: VHRMGTEGHK IDTVCSNMVL SSYGAHDALP QMGSWLQKLK GFNVPFSIRT YNSVLNSCPT IISMLKDLDS CPVSLSELRT FLNEDEALLV HELTQSSVLD
401: EAIEWNAVEG KLDLHGMHLS SSYLILLQWM DETRLRFSEE KCVIPAEIVV VSGSGKHSNV RGESPVKALV KKIMVRTGSP MRIDRKNVGS FIAKGKTVKE
501: WLCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)