AT4G17616.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:9819608..9821632 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 76502.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.04 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||
| Length | 674 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFRKRNLVLE SFRRFDSGNV ETLISWVLCS RTSKPSLFCT SVKPARLNWE VSSQVILKKK LETALKDHRV DDAWDVFKDF KRLYGFPESV IMNRFVTVLS 101: YSSDAGWLCK ASDLTRLALK QNPGMLSGDV LTKLSLSLAR AQMVESACSI LRIMLEKGYV LTSDVLRLVV MHMVKTEIGT CLASNYLVQV CDRFVEFNVG 201: KRNSSPGNVV KPDTVLFNLV LGSCVRFGFS LKGQELIELM AKVDVVADAY SIVIMSCIYE MNGMRDELRK FKEHIGQVPP QLLGHYQHFF DNLLSLEFKF 301: DDIGSAGRLA LDMCKSKVLV SVENLGFDSE KPRVLPVGSH HIRSGLKIHI SPKLLQRDSS LGVDTEATFV NYSNSKLGIT NKTLAKLVYG YKRHDNLPEL 401: SKLLFSLGGS RLCADVIDAC VAIGWLEAAH DILDDMNSAG YPMELATYRM VLSGYYKSKM LRNAEVLLKQ MTKAGLITDP SNEIVVSPET EEKDSENTEL 501: RDLLVQEINA GKQMKAPSML YELNSSLYYF CKAKMQGDAL ITYRKIPKMK IPPTVQSFWI LIDMYSSLGM YREITIVWGD IKRNIASKNL KTTQDLLEKL 601: VVNFLRGGYF ERVMELISYM KENDMYNDLT MYKNEYLKLH KNLYRTLKAS DAVTEAQAQR LEHVKTFRKL VGIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)