AT1G61960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G62085.1); Has 1059 Blast hits to 840 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 1010; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22902239..22903612 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51480.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.03 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYALIHHGRR LVQLQKLSNF RVSVQNGSAL SNSFSFASVA DATLIDSLKG NNFTVSYLVD SLGLTTKLAE SISKKVSFEE RRNPDSVLSL LTSYGFTKSQ 101: ISSIITIYPR LLALDAEKSI APKLQSLQSR GASSSELTQI VSTVPKILGK RGHKSITVYY DFVKDIIEAD KSSSYEKLCH SFPQGNKKNK IRNISVLREL 201: GVAQRLLFPL LISDGQPVCG KERFEESLKK VVEMGFDPET TKFVEALRVI YRMSDKTIEE KVNVYKRLGF GVADVWAIFK KWPSFLSYSE KKITHTFETL 301: KSCGLLKHEV LLLLKKHPKC ICSSEQKIVN SIETFLGLGF SRDEFAMMVK RYPQCIDYTA ETVKKKTEFI VKNMNWPLEA LVSIPQVFGY SLEKRTVPRC 401: NVIKTLISKG LMKDGSEAPP MSSVLTSTDQ AFLRRYVMKH DKLAPELMAI FTGENGK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)