AT1G61980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cold; LOCATED IN: mitochondrion, nucleus; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G61970.2); Has 813 Blast hits to 762 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 8; Plants - 792; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:22908162..22909418 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47239.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.32 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYSLIRHGRS LVELQKWRHL RVLVQKASPL SNSFSSASAA RLSPRVGRKG KSFTVSYLVD SLGLPKKLAE SVSRKVSFED KDNPDSVLNL LRSHGFTDSQ 101: ISTIVTDYPQ LLVADAEKSL APKLQFLQSR GASSSELTEI VSTVPKILGK RGHKTISVFY DFIKETLLDK SSKSEKSCQP FPQGNLENKI RNLSVLRELG 201: MPHKLLFPLL ISCDVPVFGK EKFEESLKKV VEMGFDPSTS KFVEALCVVQ RLSDKNIEDK VNAYKRLGFD VEYVWTVFKR WPNFLTHSEK KILNTIETFL 301: GLGFSRDEFS VLIKRFPQGI GLSAEMVKKK TEFLVKKMNW PLKALVSNPA VLGYSLEKRT VPRGNVVQAL ISKGLIGSEL PSISRVFVCT DQVFLNRYVK 401: RHEDKQLETE LMAIYRAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)