AT3G01890.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.992 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : SWIB/MDM2 domain superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT5G14170.1); Has 893 Blast hits to 865 proteins in 236 species: Archae - 0; Bacteria - 105; Metazoa - 289; Fungi - 279; Plants - 159; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:+:310332..311772 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51331.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.55 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSGNNELNAL KGPQSSLPWP FGMASASFAP SHMAPPNFQP QFQLSQDQGI SAPGRRFPHK PPIGGPPAVP PSMELTPASR KKKHKLPDKS SLQERVAAVL 101: PESALYTQLL EFESRVDAAL FRKKVDIQDS LKNPPSIQKT LRIYVFNTFS NQIPGPDPPT WTLRIFGRVL DPDHTGGLVQ NSNPLYPKFS SFFKTLKISL 201: DQSLYPENHL IEWKRDRSPA PLEGFEIKRI GCQEFAATIL LEMNYVPEKF KTSPALMQVL GIEVDTRPRI IAAIWHYVKV RKLQNPNDPS FFNCDAALHS 301: VFGEEKMKFT MLSHKISQHL SPPPPIQLVH KIKLSGNNPA ISACYDVLVD IPAPVQTELS NLLANPEKNK EIEACDEAIC GAIRKIHEHR RRRAFFLGFS 401: QSPVEFTNAL MESQTKDLKL VAGEASRNAE KEGRSEFFNQ PWVEDAAIRY LNRKPAGG |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)