AT1G63730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G63740.1); Has 17590 Blast hits to 13527 proteins in 497 species: Archae - 17; Bacteria - 935; Metazoa - 1465; Fungi - 25; Plants - 14797; Viruses - 0; Other Eukaryotes - 351 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23641770..23645132 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110516.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 966 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSSSPRT WRYRVFTSFH GPDVRKTVLS HLRKQFICNG ITMFDDQRIE RGQTISPELT RGIRESRISI VVLSKNYASS SWCLDELLEI LKCKEDIGQI 101: VMTVFYGVDP SDVRKQTGEF GIRFSETWAR KTEEEKQKWS QALNDVGNIA GEHFLNWDKE SKMVETIARD VSNKLNTTIS KDFEDMVGIE AHLQKMQSLL 201: HLDNEDEAMI VGICGPSGIG KTTIARALHS RLSSSFQLTC FMENLKGSYN SGLDEYGLKL CLQQQLLSKI LNQNDLRIFH LGAIPERLCD QNVLIILDGV 301: DDLQQLEALT NETSWFGPGS RIIVTTEDQE LLEQHDINNT YHVDFPTIKE ARKIFCRSAF RQSSAPYGFE KLVERVLKLC SNLPLGLRVM GSSLRRKKED 401: DWESILHRQE NSLDRKIEGV LRVGYDNLHK NDQFLFLLIA FFFNYQDNDH VKAMLGDSKL DVRYGLKTLA YKSLIQISIK GDIVMHKLLQ QVGKEAVQRQ 501: DHGKRQILID SDEICDVLEN DSGNRNVMGI SFDISTLLND VYISAEAFKR IRNLRFLSIY KTRLDTNVRL HLSEDMVFPP QLRLLHWEVY PGKSLPHTFR 601: PEYLVELNLR DNQLEKLWEG IQPLTNLKKM ELLRSSNLKV LPNLSDATNL EVLNLALCES LVEIPPSIGN LHKLEKLIMD FCRKLKVVPT HFNLASLESL 701: GMMGCWQLKN IPDISTNITT LKITDTMLED LPQSIRLWSG LQVLDIYGSV NIYHAPAEIY LEGRGADIKK IPDCIKDLDG LKELHIYGCP KIVSLPELPS 801: SLKRLIVDTC ESLETLVHFP FESAIEDLYF SNCFKLGQEA RRVITKQSRD AWLPGRNVPA EFHYRAVGNS LTIPTDTYEC RICVVISPKQ KMVEFFDLLC 901: RQRKNGFSTG QKRLQLLPKV QAEHLFIGHF TLSDKLDSGV LLEFSTSSKD IDIIECGIQI FHGHYR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)