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AT4G01400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 26268 Blast hits to 8959 proteins in 289 species: Archae - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants - 25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS60eggNOG:KOG0412eggNOG:KOG4197EMBL:CP002687
EnsemblPlants:AT4G01400EnsemblPlants:AT4G01400.1entrez:827943ExpressionAtlas:F4JI19
GeneID:827943GO:GO:0005829Gramene:AT4G01400.1hmmpanther:PTHR24016
hmmpanther:PTHR24016:SF0InterPro:IPR002885InterPro:IPR013167ncoils:Coil
OMA:YYITMEEPaxDb:F4JI19Pfam:PF01535Pfam:PF08318
Pfam:PF13041Pfscan:PS51375PRIDE:F4JI19PROSITE:PS51375
ProteinModelPortal:F4JI19Proteomes:UP000006548RefSeq:NP_192049.4SMART:SM00762
SMR:F4JI19STRING:3702.AT4G01400.1TAIR:AT4G01400TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.43212UniProt:F4JI19
Coordinates (TAIR10) chr4:-:573098..577243
Molecular Weight (calculated) 125331.00 Da
IEP (calculated) 4.99
GRAVY (calculated) -0.17
Length 1110 amino acids
Sequence (TAIR10)
(BLAST)
0001: MIRRPIYDFA AVFRHLTSPL STSSRFLFYS SSEHEARKPI VSNPKSPIGS PTRVQKLIAS QSDPLLAKEI FDYASQQPNF RHSRSSHLIL ILKLGRGRYF
0101: NLIDDVLAKH RSSGYPLTGE IFTYLIKVYA EAKLPEKVLS TFYKMLEFNF TPQPKHLNRI LDVLVSHRGY LQKAFELFKS SRLHGVMPNT RSYNLLMQAF
0201: CLNDDLSIAY QLFGKMLERD VVPDVDSYKI LIQGFCRKGQ VNGAMELLDD MLNKGFVPDR TLIGGLCDQG MFDEGKKYLE EMISKGFSPH FSVSNCLVKG
0301: FCSFGKVEEA CDVVEVVMKN GETLHSDTWE MVIPLICNED ESEKIKLFLE DAVKEEITGD TRIVDVGIEN KKMPEIEQDD AAAETVDSST VKFGTPEALE
0401: YVRSLTDVGA MTRLLHECIA YQRSLDSDLD TLLSQRTELD RNLVQLQRSA EILDIVKADA DHMLGNVRST CDLADQVSGK VRELDLAQSR VNVTLSRIDA
0501: IVERGNCIEG VKTALESEDY ESAAKFVQRF LQIDLQYKDS GSDQSEQLHA SKEQLEGIAK KKLLAAIDQR DHPTILRFVR LYSPLGMETE GLQLYVGYLK
0601: KVIALRGRME YENVVELMEQ GLGQVNFVGC LTNLFKDIVM AIEENDEILR GLCGEDGVAY AICELQEECD LRGSLILKKY MDFRKLAILA SDINNSPNLN
0701: ILPGGASEGP DPREVELYVE EILSLMQLGE DYTEFMVSKI KSLTSVDPEL LPTATKAFRN KSFSKAIQDV TRYYVILEGF FMVENVRKAI RIDEHVPDSL
0801: TTSMVDDVFY VLQSCLRRAI STSNISSVIA VLSYAGSLLG NDYHEALQQK IREPNLGARL FLGGIGVENT GTEIATALNN MDVSCEYILK LKHEIEEQCT
0901: EVFPAPADRE RIKSCLSELG ELSSTFKQLL NSGMEQLVAT VTPRIRPVLD TVATISYELT ETEYAENEVN DPWVQRLLHS VETNAAWLQP LMTSNNYDSF
1001: LHLIIDFIVK RLEVIMMQKR FSQLGGLQLD RDTRALVSHF SGMTQRTVRD KFARLTQMAT ILNLEKVSEI LDFWGENSGP MTWRLTPAEV RRVLGLRVEF
1101: KPESIAALKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)