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AT1G27170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transmembrane receptors;ATP binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IHU3EMBL:CP002684EnsemblPlants:AT1G27170
EnsemblPlants:AT1G27170.1entrez:839606ExpressionAtlas:F4HR53Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:839606GO:GO:0006952
GO:GO:0007165GO:GO:0009506GO:GO:0009507GO:GO:0016021
GO:GO:0043531Gramene:AT1G27170.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF151
InterPro:IPR000157InterPro:IPR002182InterPro:IPR003591InterPro:IPR011991
InterPro:IPR027417InterPro:IPR032675OMA:THEDQIHPaxDb:F4HR53
Pfam:PF00931Pfam:PF01582Pfscan:PS50104PRIDE:F4HR53
PROSITE:PS50104ProteinModelPortal:F4HR53Proteomes:UP000006548RefSeq:NP_174037.3
SMART:SM00255SMART:SM00369SMR:F4HR53STRING:3702.AT1G27170.1
SUPFAM:SSF46785SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540
TAIR:AT1G27170UniGene:At.47565UniProt:F4HR53
Coordinates (TAIR10) chr1:+:9434718..9439219
Molecular Weight (calculated) 156381.00 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.24
Length 1384 amino acids
Sequence (TAIR10)
(BLAST)
0001: MESGVVSKPH RLKYDVFLSF RGADTRDNFG DHLYKALKDK VRVFRDNEGM ERGDEISSSL KAGMEDSAAS VIVISRNYSG SRWCLDELAM LCKMKSSLDR
0101: RILPIFYHVD PSHVRKQSDH IKKDFEEHQV RFSEEKEKVQ EWREALTLVG NLAGYVCDKD SKDDDMIELV VKRVLAELSN TPEKVGEFIV GLESPLKDLT
0201: GLIDTESSSG VQVLGLYGMG GIGKTTLAKA FYNKIVGNFE QRAFISDIRE RSSAENGLVT LQKTLIKELF RLVPEIEDVS IGLEKIKANV HEKKIIVVLD
0301: DVDHIDQVHA LVGETRWYGQ GTLIVITTRD SEILSKLSVN QQYEVKCLTE PQALKLFSYH SLRKEEPTKN LLALSKKIVQ ISGLLPLAVE VFGSLLYDKK
0401: EEKDWQTQLD KLKKTQPGNL QDVLELSFKS LDDEEKKVFL DIACLFLKME IKKDEVVIVL KGCGLNAEAA LSVLRQKSLV KILANDTLWM HDQIRDMGRQ
0501: MVLKESREDP GLRSRLWDRG EIMTVLNNMK GTSSIRGIVL DFKKKFARDP TADEIVSRNL RNNPGIYSVF NYLKNKLVRF PAEEKPKSSE ITIPVESFAP
0601: MTKLRLLQIN NVELEGNLKL LPSELKWIQW KGCPLENLPP DFLARQLSVL DLSESGIRQV QTLRNKMVDE NLKVVILRGC HSLEAIPDLS NHEALEKLVF
0701: EQCTLLVKVP KSVGNLRKLI HLDFRRCSKL SEFLVDVSGL KLLEKLFLSG CSDLSVLPEN IGAMTSLKEL LLDGTAIKNL PESINRLQNL EILSLRGCKI
0801: QELPLCIGTL KSLEKLYLDD TALKNLPSSI GDLKNLQDLH LVRCTSLSKI PDSINELKSL KKLFINGSAV EELPLKPSSL PSLYDFSAGD CKFLKQVPSS
0901: IGRLNSLLQL QLSSTPIEAL PEEIGALHFI RELELRNCKF LKFLPKSIGD MDTLYSLNLE GSNIEELPEE FGKLEKLVEL RMSNCKMLKR LPESFGDLKS
1001: LHRLYMKETL VSELPESFGN LSNLMVLEML KKPLFRISES NVPGTSEEPR FVEVPNSFSK LLKLEELDAC SWRISGKIPD DLEKLSCLMK LNLGNNYFHS
1101: LPSSLVKLSN LQELSLRDCR ELKRLPPLPC KLEQLNLANC FSLESVSDLS ELTILTDLNL TNCAKVVDIP GLEHLTALKR LYMTGCNSNY SLAVKKRLSK
1201: ASLKMMRNLS LPGNRVPDWF SQGPVTFSAQ PNRELRGVII AVVVALNDET EDDDYQLPDV MEVQAQIHKL DHHKCTNTLH LSGVPRTNND QLHICRYSAF
1301: HPLVTMLKDG YTIQVIKRNP PIKQGVELKM HGIHLVYEGD DDLEGRENTL PETQQTVSQK LANFFSSFEE EEGETISESE STVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)