AT5G13590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4374718..4378647 | ||||||||||||||||||||
| Molecular Weight (calculated) | 129539.00 Da | ||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||
| Length | 1168 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGSQEPRIR PSTWSCSDIP IKKRKYLVQP QMEEAVSTQI PQPNEQGDTR SAHADETQKM TGREPTSSLP SVPVGISGKG KSIGNIVFDQ TRVKFEKPSS 0101: PIHSSPLAGF DIPSSSNVLG SSIHFPMGKL PVGAEHAGLV VPSNQTRMKV EKTVLKTHDI VRKTGDKETL RGECQTEASS GAKTVSLQLS CNTKNNSPYW 0201: KDEEPTELNL SLSKGVCPAH NTDSTSTKSG NSGLNRENWD LNTTMDVWED ALDRTRGAFL NSNRSLRDIE RSSCRDTTAI TKSVSERQKE SVGFSSPKVT 0301: LMQFDNHVNP TCSLSLGLSS YPPIEKSPSL PATTSEARAG NVCSVNLRTV KSEIVEESVR QATESTQVSP IGLSIKGLKH EGIGRFSQGN SPSFGILKTV 0401: VPISIKAEPN TFSQSEVFNR KDGMLNHPHT PIMQSNEIPD LPTSSTPYQK DKYLPCSNGI SNAPMPLSGM TIIPGVQSDP DCTSKENSGQ SSSLANGKLR 0501: EVLKHGGVYT TYSGHGDHNL NASGVNVTSL TEEKILDDCK PCISKELPCN SRGTDELSRN DEEKITLPGK ELEEQLYSYG FESDRGYDLS RVIKEQVGKR 0601: NLCDDGKVQG PAAVFTESNE VAHPECGGSE TEQRNINVPC HVHFHNSNHV EEKGSQPALL GYTGETEGRI VQDGEGTSGV STVSGGIENP EIVDNSSPVS 0701: LKAEMSTIDN DSPMECSDGS QSRIINLTQV KSPVKALDAS GSFVPPRMER DRFHDFPLEP REYTFRGSDE SCKFSRERYH GRIMRSPRLN FIPDRRRLPD 0801: NTESNLHDQD TKKFEFDNHG NTRRGGAFMS NFQRGRRPAN DGVTPYAHSF PRRSPSFSYN RGPTNKEDTS AFHGFRDGEK FTRGLQCNNT EPLFMNHQRP 0901: YRGRSGFARG RTKFVNNPKR DFPGFRSRSP VRSRERSDGS SSSFRNRSQE EFSGHTDFSH RRSPSGYKVE RMSSPDHSGY SREMVVRRHN SPPFSHRPSN 1001: AGRGRGYARG RGYVRGRGYG RDGNSFRKPS DHVVHRNHGN MNNLDPRERV DYSDDFFEGQ IHSERFGVDV NAERRRFGYR HDGTSSSFRP SFNNDGCAPT 1101: NVENDPDAVR FQQDPRIKIE EQGSLMEIDG ENKNSTENAS GRTKNMEEEE TSKNSKIWQP DELGGDGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)