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AT5G46520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46510.1); Has 17530 Blast hits to 12991 proteins in 492 species: Archae - 6; Bacteria - 943; Metazoa - 980; Fungi - 57; Plants - 15109; Viruses - 15; Other Eukaryotes - 420 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410J6H3EMBL:AB019223EMBL:AK226782
EMBL:CP002688EnsemblPlants:AT5G46520EnsemblPlants:AT5G46520.1entrez:834695
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834695
Genevisible:F4KHI3GO:GO:0005524GO:GO:0005634GO:GO:0005829
GO:GO:0006952GO:GO:0007165GO:GO:0010082GO:GO:0043531
Gramene:AT5G46520.1hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20HOGENOM:HOG000064702
InParanoid:F4KHI3InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
KEGG:ath:AT5G46520OMA:NLEHFPEPaxDb:F4KHI3Pfam:F4KHI3
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PRIDE:F4KHI3PRO:PR:F4KHI3PROSITE:PS50104ProteinModelPortal:F4KHI3
Proteomes:UP000006548RefSeq:NP_199464.2SMART:SM00255SMART:SM00382
SMR:F4KHI3STRING:3702.AT5G46520.1SUPFAM:SSF46785SUPFAM:SSF52058
SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G46520UniGene:At.29951
UniGene:At.55405UniProt:F4KHI3
Coordinates (TAIR10) chr5:+:18867840..18871976
Molecular Weight (calculated) 132796.00 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.23
Length 1168 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSRNW VYDVFLSFSG KDVRVTFRSH FLKELDRKLI SAFRDNEIER SHSLWPDLEQ AIKDSRIAVV VFSKNYASSS WCLNELLEIV NCNDKIIIPV
0101: FYGVDPSQVR YQIGEFGSIF EKTCKRQTEE VKNQWKKALT DVANMLGFDS AKWDDEAKMI EEIANDVLAK LLLTSSTDSA ENSIGIEDHI ANMSVLLKLE
0201: AEEVRMVGIW GSSGIGKTTI ARALFNQLSR HFPVSKFIDR AFVYKSRETY KGANPDDPNM KLHLQGCFLS EILGKKDIKI DHLGALGERL KHQKTLIIID
0301: DLDDLVVLDS LVGKTNWFGC GSRIIVITNN KQFLRAHGID HIYEVSLPSK ERAQEMFCQS AFGENSPPEG FEELVVEIAW LAGSLPLGLT VFGSALRGRK
0401: KEYWVKMLPR LQNDLDGNIE ETLKVSYDAI GNVKDQALFR LIACLFNHVK VRDIELLLAD SGLDVNIALE NLVDKSLIHV RNDHVEMHRL LQETGRNIVR
0501: SQSTDNPGER EFLVDSNDSR TVLSEGIGTR KVLGISLDTS KVSEFCVHEN AFKGMGNLLF LDISSKTFIE EEVKVHLPEK INYYSVQPKQ LIWDRFPLKC
0601: MPYTFLRNLV KLEMHDSKLE KLWEGAMSFT CLKELDMWAS KYLKEIPDLS KATNIEKLDF GHCWSLVELP SSIRNLNKLL ELNMEYCGEL ETLPTGFNLK
0701: SLDYLNFNEC WKLRTFPEFA TNISNLILAE TSIEEYPSNL YFKNVRELSM GKADSDENKC QGVKPFMPML SPTLTLLELW NIPNLVELSS SFQNLNNLER
0801: LDICYCRNLE SLPTGINLES LVSLNLFGCS RLKRFPDIST NIKYLDLDQT GIEEVPWQIE NFFNLTKLTM KGCRELKCVS LNIFKLKHLG EVSFSNCGAL
0901: TRVDLSCYPS GVEMMKADNA DIVSEETTSS LPDSCVLNVN FMDCVNLDRE PVLHQQSIIF NSMILPGEEV PSYFTYRTSD SQPFGTSSSL PIPLLPTQLS
1001: QPFFRFRVCA VVSASNGVYI GVYSRFKGRI GNKFDSFGEV HNFMEIEKGI HLCIFDCRIR LYKDNVPLSQ LNYDHVDINI HITSGDWRST VVLKEWGIRL
1101: LETGSSAENR LGNPNSTLPH VSQAEEGNMG YYTHVQGLVN EIENSEDSGD NNVETERSKK RMRLHHFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)