AT1G15890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.888 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5461406..5463961 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95850.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 851 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNCVALEIS CDQTLNHACG CLFGDRNYIL KMEANLEALQ NTMQELEERR DDLLRRVVIE EDKGLQRLAQ VQGWLSRVKD VCSQVNDLLK AKSIQTERLC 101: LCGYCSKNFI SGRNYGINVL KKLKHVEGLL AKGVFEVVAE KIPAPKVEKK HIQTTVGLDA MVGRAWNSLM KDERRTLGLY GMGGVGKTTL LASINNKFLE 201: GMNGFDLVIW VVVSKDLQNE GIQEQILGRL GLHRGWKQVT EKEKASYICN ILNVKKFVLL LDDLWSEVDL EKIGVPPLTR ENGSKIVFTT RSKDVCRDME 301: VDGEMKVDCL PPDEAWELFQ KKVGPIPLQS HEDIPTLARK VAEKCCGLPL ALSVIGKAMA SRETVQEWQH VIHVLNSSSH EFPSMEEKIL PVLKFSYDDL 401: KDEKVKLCFL YCSLFPEDYE VRKEELIEYW MCEGFIDGNE DEDGANNKGH DIIGSLVRAH LLMDGELTTK VKMHDVIREM ALWIASNFGK QKETLCVKPG 501: VQLCHIPKDI NWESLRRMSL MCNQIANISS SSNSPNLSTL LLQNNKLVHI SCDFFRFMPA LVVLDLSRNS SLSSLPEAIS KLGSLQYINL STTGIKWLPV 601: SFKELKKLIH LNLEFTDELE SIVGIATSLP NLQVLKLFSS RVCIDGSLME ELLLLEHLKV LTATIKDALI LESIQGVDRL VSSIQALCLR NMSAPVIILN 701: TVALGGLQHL EIVGSKISEI KIDWERKGRG ELKCTSSPGF KHLSVVEIFN LEGPRDLTWL LFAQNLRRLS VTLSLTIEEI INKEKGMSIT NVHPNIVVPF 801: GKLEFLEVRG LDELKRICWN PPALPNLRQF DVRSCLKLPE AATEFPRHAN E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)