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AT3G19780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.631
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV7NeggNOG:ENOG410ZK78EMBL:CP002686EnsemblPlants:AT3G19780
EnsemblPlants:AT3G19780.1entrez:821515ExpressionAtlas:F4JCD3Gene3D:3.40.30.10
GeneID:821515Gramene:AT3G19780.1hmmpanther:PTHR18929hmmpanther:PTHR18929:SF92
InParanoid:F4JCD3InterPro:IPR003774InterPro:IPR012336ncoils:Coil
OMA:PLIYLMDPaxDb:F4JCD3Pfam:PF02622PRIDE:F4JCD3
ProteinModelPortal:F4JCD3Proteomes:UP000006548RefSeq:NP_566646.5SUPFAM:SSF143456
SUPFAM:SSF52833TAIR:AT3G19780UniGene:At.50205UniGene:At.66501
UniProt:F4JCD3
Coordinates (TAIR10) chr3:+:6870238..6874677
Molecular Weight (calculated) 119043.00 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.33
Length 1059 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKTPTLLLLP FLVFVSIILP SSCHGEWEIL TEQNFSSQIR LHPHVLLFVT TPWCGESRSL KYEITQMVQR REEFGLLKLM VVYRNSEKVL AQAIGAAVNG
0101: ITILYYHNSV PYNYLGKLRA SNILSSIHPY LTSTPEELPL KHLKSPKSLK DFLQSSDKAL LLFEFCGWTT TLMSELKKNV TQDNLWQEWN NMCGLQSGFG
0201: KVPWLEDFSY ANDTAALQEH GRVNLGLGQT CNHEEFKRFS SFLLKLIATT KEFSLPPERQ KFGLITEESL ASSFNFGKSD SWAAVLQLAG CPHCSKIFKA
0301: GDDIQRFLKM ENPIVTELED DWQDHESSLP ASKPSVILFV DRSSGSLEEM RRSIKALDTF RQVAAQHKLS DIKKWENDIM YENPVSQTDQ ESGSVPLPKT
0401: VQKFKKIKFE NKVSFMIMDG GKHVALDTIA PGMEGSSLQE ILKNLLHRRK ESKLSSIAKD VGFRLLSDDV HIKVLDALPS QAEVVSGQDT TSSSAEGSSE
0501: ISLHPTEADV QNRVSMSSEA KDEMKSSEIE SSSPSDEEQA TTNRSEQLVV AETDKTEVYL KDNVNGEIKV SLHSEPKEDL VHKFTGSFFF SDANYVLLRA
0601: LTGDVKIPSA VIIDPALQQH YVLQDKFSYS SLVDFLDGYL NGSLSPYAQS ESSIQTPKRA AVPPFVNLDF HEVDSIPRVT VSTFSHMVHA WDQSSAEKAP
0701: CPLCQDVLVF FSNTWCGFCQ RMELVLHEVY RSLKEYKAII QGGSRNNQRS ELAETPTNGE NLKSPLIYLM DCTLNDCSLI LKSINQREVY PSLILFPAER
0801: NKVTPYEGES SVTDITEFLA RHANNSREFF RLLPTLSRNG RRNSNKVDQS SSSAVNNKVT DGDKLVEVVL RNREPAEREV NHDQVNSQSP PIHSLTNAPQ
0901: VKTGTVLVAT EKLAASLTFA KSKILIIKAG PEIGFLGLIF NKRIRWKSFP DLGETAELLK ETPLSFGGPV VDPGIPLLAL TRERDSSTNH DHPEISPGVY
1001: FLDHQSVARR IQELKSRELN PSEYWFFLGY SSWSYEQLFD EIGLGVWDVD NSDIDFAWP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)