suba logo
AT5G39130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 2 (TAIR:AT5G39190.1); Has 1495 Blast hits to 1489 proteins in 85 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 27; Plants - 1451; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJA4eggNOG:ENOG410YERYEMBL:AB016892EMBL:AY062797
EMBL:BT003354EMBL:CP002688EnsemblPlants:AT5G39130EnsemblPlants:AT5G39130.1
entrez:833906Gene3D:2.60.120.10GeneID:833906Genevisible:Q9FIC8
GO:GO:0030145GO:GO:0045735GO:GO:0048046Gramene:AT5G39130.1
hmmpanther:PTHR31238hmmpanther:PTHR31238:SF44HOGENOM:HOG000235000InParanoid:Q9FIC8
InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
InterPro:IPR019780KEGG:ath:AT5G39130OMA:FCKDPERPaxDb:Q9FIC8
Pfam:PF00190Pfam:Q9FIC8PhylomeDB:Q9FIC8PRIDE:Q9FIC8
PRINTS:PR00325PRO:PR:Q9FIC8PROSITE:PS00725ProteinModelPortal:Q9FIC8
Proteomes:UP000006548RefSeq:NP_198729.1scanprosite:PS00725SMART:SM00835
SMR:Q9FIC8STRING:3702.AT5G39130.1SUPFAM:SSF51182TAIR:AT5G39130
UniGene:At.49103UniGene:At.65UniProt:Q9FIC8
Coordinates (TAIR10) chr5:-:15665638..15666413
Molecular Weight (calculated) 24010.90 Da
IEP (calculated) 6.34
GRAVY (calculated) 0.22
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVSQSLIPF AIIALVLSFV NAYDPSPLQD FCVAIDDLKG VFVNGRFCKD PERVDAKDFF FSGLNVPGNT NNQVGSNVTT VNVDQIPGLN TMGISLVRID
101: YAPHGQNPPH THPRGSEILV LVEGTLYVGF VSSNQDNNRL FAKVLHPGDV FVFPIGMIHF QLNIGKIPAI AFAGLSSQNA GVITIANTVF GSNPPIYPEL
201: LARAFQLDAN VVKELQAKFG SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)