AT5G39120.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39150.1); Has 1513 Blast hits to 1505 proteins in 94 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 1449; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:15662705..15663486 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 23867.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.78 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 221 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKVSMSLILI TFWALVTIAK AYDPSPLQDF CVAIDDPKNG VFVNGKFCKD PKQAKAEDFF SSGLNQAGIT NNKVKSNVTT VNVDQIPGLN TLGISLVRID 101: YAPYGQNPPH THPRATEILV LVEGTLYVGF VSSNQDNNRL FAKVLNPGDV FVFPIGMIHF QVNIGKTPAV AFAGLSSQNA GVITIADTVF GSTPPINPDI 201: LAQAFQLDVN VVKDLEAKFK N |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)