suba logo
AT5G39120.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39150.1); Has 1513 Blast hits to 1505 proteins in 94 species: Archae - 0; Bacteria - 12; Metazoa - 0; Fungi - 39; Plants - 1449; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJA4eggNOG:ENOG410YERYEMBL:AB016892EMBL:CP002688
EnsemblPlants:AT5G39120EnsemblPlants:AT5G39120.1entrez:833905Gene3D:2.60.120.10
GeneID:833905Genevisible:Q9FIC9GO:GO:0030145GO:GO:0045735
GO:GO:0048046Gramene:AT5G39120.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF44
HOGENOM:HOG000235000InParanoid:Q9FIC9IntAct:Q9FIC9InterPro:IPR001929
InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710InterPro:IPR019780
KEGG:ath:AT5G39120OMA:PMDITKSPaxDb:Q9FIC9Pfam:PF00190
Pfam:Q9FIC9PhylomeDB:Q9FIC9PRINTS:PR00325PRO:PR:Q9FIC9
PROSITE:PS00725ProteinModelPortal:Q9FIC9Proteomes:UP000006548RefSeq:NP_198728.1
scanprosite:PS00725SMART:SM00835SMR:Q9FIC9STRING:3702.AT5G39120.1
SUPFAM:SSF51182TAIR:AT5G39120UniGene:At.55242UniProt:Q9FIC9
Coordinates (TAIR10) chr5:-:15662705..15663486
Molecular Weight (calculated) 23867.70 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.13
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVSMSLILI TFWALVTIAK AYDPSPLQDF CVAIDDPKNG VFVNGKFCKD PKQAKAEDFF SSGLNQAGIT NNKVKSNVTT VNVDQIPGLN TLGISLVRID
101: YAPYGQNPPH THPRATEILV LVEGTLYVGF VSSNQDNNRL FAKVLNPGDV FVFPIGMIHF QVNIGKTPAV AFAGLSSQNA GVITIADTVF GSTPPINPDI
201: LAQAFQLDVN VVKDLEAKFK N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)