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AT5G40000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.820
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28600.1); Has 22558 Blast hits to 20981 proteins in 2878 species: Archae - 1356; Bacteria - 8037; Metazoa - 3478; Fungi - 2844; Plants - 2554; Viruses - 38; Other Eukaryotes - 4251 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.3eggNOG:COG0465eggNOG:KOG0743EMBL:AB010077
EMBL:CP002688EnsemblPlants:AT5G40000EnsemblPlants:AT5G40000.1entrez:833997
Gene3D:3.40.50.300GeneID:833997GO:GO:0005524GO:GO:0005886
GO:GO:0016887Gramene:AT5G40000.1HOGENOM:HOG000237995InParanoid:F4KFX5
InterPro:IPR003593InterPro:IPR003959InterPro:IPR003960InterPro:IPR025753
InterPro:IPR027417iPTMnet:F4KFX5KEGG:ath:AT5G40000OMA:CGQERIV
PaxDb:F4KFX5Pfam:PF00004Pfam:PF14363PRIDE:F4KFX5
PROSITE:PS00674ProteinModelPortal:F4KFX5Proteomes:UP000006548RefSeq:NP_198816.1
scanprosite:PS00674SMART:SM00382SMR:F4KFX5STRING:3702.AT5G40000.1
SUPFAM:SSF52540SwissPalm:F4KFX5TAIR:AT5G40000TMHMM:TMhelix
UniGene:At.51146UniProt:F4KFX5
Coordinates (TAIR10) chr5:-:16011072..16012484
Molecular Weight (calculated) 54097.50 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.47
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMMGDSFGS IGSSMASLFF LWATIQQIFP DHLKITIKEF LLSSFQQLCF AQRVSDHFTN LFSPYVEIHF PESDEYSFNQ AFSAIDTYLD SKATDKTKHL
101: RGSQVKESKG LVLKRNEAKV RDEYKGANVW WERVVDNDGN RYYKLTFHNR ARTLITNSYI KYVVEEGKSI IVKNKQTRLF TNNLSTQWVF GQNMWRSIEF
201: EHPASFQTLA MDPKKKEEIV NDLIAFSNGK EYYKKIGKAW KRGYLLYGPP GTGKSTMISA MANLLNYNIY DLELTAVKNN SELKKLLTAT SSKSIIVIED
301: IDCSADFTSN RIKKESNSRE RYGKEDKDEN SVTLSGLLNF IDGIWSACGQ ERIVVFTTNH LEKLDPALIR RGRMDMHIEL SYCTYEAFKI LAKNYLDLDG
401: DDAHPLFSEI KALLEETKIS PADVAENLMA RNQQIDVDKS LNLLISALEE ENQYQRSQQE KKKSKFKIFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)