suba logo
AT5G06720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22430844 (2012): Golgi
  • PMID:22363647 (2012): extracellular region apoplast
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : peroxidase 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
peroxidase 2 (PA2); FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06720-MONOMEREC:1.11.1.7eggNOG:ENOG410IK8BeggNOG:ENOG410YBAI
EMBL:AP002032EMBL:AY056186EMBL:AY087674EMBL:AY096713
EMBL:CP002688EMBL:X99952EnsemblPlants:AT5G06720EnsemblPlants:AT5G06720.1
entrez:830561EvolutionaryTrace:Q42578GeneID:830561Genevisible:Q42578
GO:GO:0002215GO:GO:0004601GO:GO:0005576GO:GO:0005794
GO:GO:0006979GO:GO:0009908GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT5G06720.1hmmpanther:PTHR31388hmmpanther:PTHR31388:SF8
HOGENOM:HOG000237557InParanoid:Q42578InterPro:IPR000823InterPro:IPR002016
InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7
KEGG:ath:AT5G06720KO:K00430OMA:QICPQNGPaxDb:Q42578
PDB:1PA2PDB:1QO4PDBsum:1PA2PDBsum:1QO4
PeroxiBase:219Pfam:PF00141Pfam:Q42578Pfscan:PS50873
PhylomeDB:Q42578PRIDE:Q42578PRINTS:PR00458PRINTS:PR00461
PRO:PR:Q42578PROSITE:PS00435PROSITE:PS00436PROSITE:PS50873
ProteinModelPortal:Q42578Proteomes:UP000006548RefSeq:NP_196290.1scanprosite:PS00435
scanprosite:PS00436SMR:Q42578STRING:3702.AT5G06720.1SUPFAM:SSF48113
TAIR:AT5G06720tair10-symbols:ATPA2tair10-symbols:PA2TMHMM:TMhelix
UniGene:At.93UniProt:Q42578
Coordinates (TAIR10) chr5:-:2077567..2078857
Molecular Weight (calculated) 34991.00 Da
IEP (calculated) 4.52
GRAVY (calculated) 0.13
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTNLPTCD GLFIISLIVI VSSIFGTSSA QLNATFYSGT CPNASAIVRS TIQQALQSDT RIGASLIRLH FHDCFVNGCD ASILLDDTGS IQSEKNAGPN
101: VNSARGFNVV DNIKTALENA CPGVVSCSDV LALASEASVS LAGGPSWTVL LGRRDSLTAN LAGANSSIPS PIESLSNITF KFSAVGLNTN DLVALSGAHT
201: FGRARCGVFN NRLFNFSGTG NPDPTLNSTL LSTLQQLCPQ NGSASTITNL DLSTPDAFDN NYFANLQSND GLLQSDQELF STTGSSTIAI VTSFASNQTL
301: FFQAFAQSMI NMGNISPLTG SNGEIRLDCK KVNGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)