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AT5G06730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: plasma membrane; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: peroxidase 2 (TAIR:AT5G06720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G06730-MONOMEREC:1.11.1.7eggNOG:ENOG410IK8BeggNOG:ENOG410YBAI
EMBL:AK118827EMBL:AP002032EMBL:AY088509EMBL:BT008584
EMBL:CP002688EMBL:Y11794EnsemblPlants:AT5G06730EnsemblPlants:AT5G06730.1
entrez:830562GeneID:830562Genevisible:Q9FG34GO:GO:0004601
GO:GO:0005576GO:GO:0005774GO:GO:0006979GO:GO:0020037
GO:GO:0042744GO:GO:0046872Gramene:AT5G06730.1hmmpanther:PTHR31388
hmmpanther:PTHR31388:SF8HOGENOM:HOG000237557InParanoid:Q9FG34InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
KEGG:00940+1.11.1.7KEGG:ath:AT5G06730KO:K00430OMA:TIGRAHY
PaxDb:Q9FG34PeroxiBase:220Pfam:PF00141Pfam:Q9FG34
Pfscan:PS50873PhylomeDB:Q9FG34PRIDE:Q9FG34PRINTS:PR00458
PRINTS:PR00461PRO:PR:Q9FG34PROSITE:PS00435PROSITE:PS00436
PROSITE:PS50873ProteinModelPortal:Q9FG34Proteomes:UP000006548RefSeq:NP_196291.1
scanprosite:PS00435scanprosite:PS00436SMR:Q9FG34STRING:3702.AT5G06730.1
SUPFAM:SSF48113TAIR:AT5G06730TMHMM:TMhelixUniGene:At.90
UniProt:Q9FG34
Coordinates (TAIR10) chr5:-:2080207..2081621
Molecular Weight (calculated) 37292.50 Da
IEP (calculated) 4.27
GRAVY (calculated) 0.03
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVTSSSSTC DGFFIISLIV IVSSLFGTSS AQLNATFYSG TCPNASAIVR STIQQALQSD ARIGGSLIRL HFHDCFVNGC DGSLLLDDTS SIQSEKNAPA
101: NANSTRGFNV VDSIKTALEN ACPGIVSCSD ILALASEASV SLAGGPSWTV LLGRRDGLTA NLSGANSSLP SPFEGLNNIT SKFVAVGLKT TDVVSLSGAH
201: TFGRGQCVTF NNRLFNFNGT GNPDPTLNST LLSSLQQLCP QNGSNTGITN LDLSTPDAFD NNYFTNLQSN NGLLQSDQEL FSNTGSATVP IVNSFASNQT
301: LFFEAFVQSM IKMGNISPLT GSSGEIRQDC KVVNGQSSAT EAGDIQLQSD GPVSVADM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)