AT3G45960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : expansin-like A3 | ||||||||||||||||
| Curator Summary (TAIR10) |
member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) | ||||||||||||||||
| Computational Description (TAIR10) |
expansin-like A3 (EXLA3); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: membrane, plant-type cell wall; EXPRESSED IN: leaf apex, hypocotyl, root, flower, leaf; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin-like A1 (TAIR:AT3G45970.1); Has 1653 Blast hits to 1650 proteins in 114 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1646; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:16893058..16893789 | ||||||||||||||||
| Molecular Weight (calculated) | 23393.00 Da | ||||||||||||||||
| IEP (calculated) | 9.20 | ||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||
| Length | 215 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATSFFAGHI AAAIPSIYKD GAGCGACFQV RCKNPKLCNS KGTIVMVTDL NTSNQTDLVL SSRAFRAMAK PVVGVDKYLL KQGIVDVEYQ RVPCNYGKRN 101: LNVRVEEASK KPNYLAIKLL YQGGQTEVVG IDIAPVGSSQ WSYMSRSHGA VWATDKVPTG ALQFKFTVTG GYDGKTVWSK RVLPANWNSG RIYDAGVQIT 201: DIAQEGCDTC GHIWN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)