AT2G45380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.979 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, flower, cultured cell; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G34070.1); Has 171 Blast hits to 170 proteins in 31 species: Archae - 2; Bacteria - 0; Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18699588..18703093 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 55153.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLDKVLEDE VVEDTGESQV FNLLNPEFVD FDTCLDPITN ELPTSANQKA LFRTHSQKER VERVRAILSG RSIENNRRTE TTKPAGELRR EKTPAKKGNS 101: NSSSVDHRFT SASRAFTQKK LDDLKSLFVS LASKSHSNDQ YVSYPVFQEY FGLSGSLGER IFDMVTQHRK DDKMTFEDLV IAKMTFEDLV IAKSTLPLEF 201: LGSSRILSKI AEVKRGIRKM GDPFGGRFGG FRGSLFGGRD PFDDPFFSRP FEDLLEPSNT FSSGASFSNA HKNNGGRGLT IEELPSDEEV EERKDIGIDD 301: QEHASSVNKP SVEHPEDDSD AERKIQNVNQ RSDFNRREGT QSRANTFRHH ISKVTYGGIH GAYYTSTRTR RKDGDGMVVE ESKEADKTTG EATHRISRGI 401: NDKGHSVTRK LNSSGGVEST QTLHNLDEDE LSGFEEAWKG NSSLGKHEFT GSDNSFGGWV LPSLDQIRRQ TDQSQTGSSR SATGAKKVVR INIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)