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AT1G76780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G76770.1); Has 310212 Blast hits to 103002 proteins in 3336 species: Archae - 2366; Bacteria - 38795; Metazoa - 125626; Fungi - 30439; Plants - 14934; Viruses - 1639; Other Eukaryotes - 96413 (source: NCBI BLink).
Protein Annotations
EMBL:AC010718EMBL:CP002684EnsemblPlants:AT1G76780EnsemblPlants:AT1G76780.1
entrez:844012GeneID:844012GO:GO:0016021Gramene:AT1G76780.1
hmmpanther:PTHR11527hmmpanther:PTHR11527:SF169InterPro:IPR002068InterPro:IPR008978
InterPro:IPR031107KEGG:ath:AT1G76780ncoils:CoilOMA:KQIQKPT
PANTHER:PTHR11527Pfscan:PS01031PhylomeDB:Q9SRD5PIR:D96796
PROSITE:PS01031Proteomes:UP000006548RefSeq:NP_177804.1SUPFAM:SSF49764
TAIR:AT1G76780TMHMM:TMhelixUniGene:At.28236UniGene:At.52535
UniProt:Q9SRD5
Coordinates (TAIR10) chr1:+:28816641..28822256
Molecular Weight (calculated) 216912.00 Da
IEP (calculated) 4.51
GRAVY (calculated) -1.51
Length 1871 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVMIRWMAWR KEVEFSVFKK VFRIPDTVDL DKIKARFDDD DATLTITMPK RVKGISGFKI EEEEEEEEEE EERVDVSEAE HKEETEKGEL KDDYLEKSHQ
0101: IDERIEEEKG LADSNKESVD SSLRKPPDIE GRECHEQTRH EEQENNKQLV QAESDDSDDF GSRAFEEIEE QESDVLDRTS TSGAMEKEMT DDVGDGLRKV
0201: QGIEEPERHN EESKISEMVD GETSGHEKKK VVKMDKKNRD VKEEVDGAMG EGFRPNIDRT QVVGDDEIAE TEKNDEEFES DKLEADEVDK INEGGNTKVR
0301: RHSEDRNLIK LQEKEEQHSK EQKGHSKEEN MKELVEEKTP EAETTIRNDI LGPGQEIEVP EVDTLGKTSD EGKEKQNIVK KEIKNGDATE EIDAKMGEVF
0401: ASNIADTGMN SEDFESDKLE SADEVDKMVE KKDRQEENDK VGAQSEDISL TKLQEIGEQQ FQGQKRHDKQ ENIKELREGQ ASEAEKNIKN DILKPVQKRS
0501: EGKHKIQKTF QEETNKQPEG YNEKIMETGK KINEDGTRKV QEMIRQQELD EPARSEKENR SRELVKSKTN DEEKKEKEIA GTERKEKESD RPKILREQEV
0601: ADEVAEDKTK FSIYGEVKEE EEIAGKEKEF GSDDDIARIV RDTEQLDSNA MKGQEEKDMI QELVLEEKVC DGGKGIIAVA ETKAENNKSK RVQETEEQKL
0701: DKEDTCGKHF QKLIEGEISD HGEVEDVEKG KKRTEAEKRI KDRAREAEEI KEKDLGVSGR YIKGTTIKEL VENRGIYRNE HEEKKKDDAN RPEKITGTIK
0801: QELVSLNSQL RQENVEDGDK TQELVEEKIK DCEEEEGSEE SKIKTDDVVR KVQGIKEEEL YKPKREHGTK ITELVEETTG DYEKQEEKET AESDIEAECG
0901: SLRKVDGIEE HELHEPKIHK ERDNNRVTGA KEPSGQEKGE KEEKIVESMT ITENDNSIDV QETKKERPGR LESHDKRYKI QELLMEAGHN DRKEEEQNEN
1001: VTAEVELETE RVSSKKVQEG KMEDDNSGKF HEFEERKSYE DWTHEKREKR KVLVEEEETY PKDKHTGGED HNDHKEEEQK ENVIAKAELN TEEDSFKKVE
1101: EIEKQDHGEL KRSMVQAKRQ ETEEKDKTRA MEKNETVERR KQTKDGSLGK LREGEDPELG GHERRGEEDR IEELVETEIS DHKEKVKKKD EDYILRSQDT
1201: GKVDLGERER RSKQRKIHKS VEDEIGDQED EDAEEAAAVV SRNENGSSRK VQTIEEESEK HKEQNKIPET SNPEVNEEDE ERVVEKETKE VEAHVQELEG
1301: KTENCKDDDG EGRREERGKQ GMTAENMLRQ RFKTKSDDGI VRKIQETKEE EPDEKKSQES SSHVVKLVAE DGSLRNGLEF SEKESTVSKM LKLDESKEKE
1401: EHKKIRKPTE ERSNAPVIEK QGNKKNAEEE MQDKIDRRGK NQEIKGQEPY GVLRNGEHDK ITEYHRGEEK GTAENVSSTK IQQTKDELEK PRKPSEISEN
1501: HNIHEFMDSS QSQDIEEKGS DQAEKYAKQN KIQEVMNDED KKEEYHISER VRNEMAKRIL QVESKANDGS SKKNETEGQE STGLRGRKKR ENHQELVELE
1601: TSDQKKGVKE DEVVGKAEII EDEYDSSRKI HEHEERMSDK LEMHGEEEMS EKLAEEETSD GEEAKEGNRA GKKSRDDGFG KVRKIEVQRK DNDQSFVEKD
1701: TSGKAKENLN DEEPTKTETK ATDNESRKIH QIKEQGTSEQ ERLKEQGRIK ELVEDRTHFC REKENRETEY EDGSSKMIQE IDKEESIEPV DRETSEDDEE
1801: ELEIEFEDEE EDWEAEVIQE TDSDSDNDKI RQIKRIRLGF RLVGGSTLFM SLIVIVISII RSKRNIRCYK F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)