AT3G60110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-binding bromodomain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: DNA-binding bromodomain-containing protein (TAIR:AT2G44430.1); Has 40209 Blast hits to 25016 proteins in 1620 species: Archae - 68; Bacteria - 5263; Metazoa - 15621; Fungi - 3406; Plants - 1675; Viruses - 190; Other Eukaryotes - 13986 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22197993..22201159 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72049.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.73 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.29 | ||||||||||||||||||||||||||||||||
| Length | 641 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEDEEEEAV ISNGMNDDDD TNNINNSSTE FDNNRIGDGD DNSNLNQIKQ VWGTWEELVL TCAVKRHAFS DWDSVAKEVQ ARSRSSLIVS AVNCRLKYQD 101: LKRRFQDSVD VGDENTEAAA NEEDEVGEIS WLEQLRSLHM AELRREVQRC DDSILSLQLK VKKLEEEKDG DDGDNKPDLK NDETKPVRVN RETTESDRDD 201: NRSMNESNST ASVDKIADHD RLDGDKMVKA NENSRNPDPD PVNKAETPEE EERTVSKRSE MSNSGELDES GTSNCLGKRK GQKYRSGGGG GGVKSAGDKS 301: QPLIDIIKLI RSHPRGSVFE SRLRSQDTKD YKRLIRQHLD MKTIEKKMEK GSYVSSSLSF YRDLKLLFTN AIVFFPTSSS ESIAAQELRT LVSNEMKKRT 401: GKLGHCVIKS EAESSVSRQK SSVLSLVPCK KKSSALKKTS PSSSSRQKDE KKSQEVSEEK IVTTTATTSA RSSRRTSKEI AVVAKDTKTG RAKNNIKKQT 501: DTKTESSDDD DDEKEENSKT EKKTVADKKK SVADFLKRIK KNSPQKGKET TSKNQKKNDG NVKKENDHQK KSDGNVKKEN SKVKPRELRS STGKKKVEVE 601: NNNSKSSSKR KQTKETAEVA TGKRGRESGK DDKQPRKRSR R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)