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AT4G14368.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.679
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT3G23270.1); Has 23075 Blast hits to 9219 proteins in 606 species: Archae - 56; Bacteria - 2851; Metazoa - 9367; Fungi - 1087; Plants - 2969; Viruses - 60; Other Eukaryotes - 6685 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:ENOG410IHT4EMBL:CP002687EnsemblPlants:AT4G14368
EnsemblPlants:AT4G14368.1entrez:7922506Gene3D:2.130.10.30Gene3D:2.30.29.30
Gene3D:3.30.40.10GeneID:7922506GO:GO:0046872Gramene:AT4G14368.1
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF87InParanoid:F4JVE8InterPro:IPR000306
InterPro:IPR000408InterPro:IPR001849InterPro:IPR009091InterPro:IPR011011
InterPro:IPR011993InterPro:IPR013083InterPro:IPR013591InterPro:IPR017455
InterPro:IPR027988KEGG:ath:AT4G14368ncoils:CoilOMA:IEVAFQS
PaxDb:F4JVE8Pfam:PF00415Pfam:PF01363Pfam:PF08381
Pfam:PF13713Pfam:PF16457Pfscan:PS50012Pfscan:PS50178
Pfscan:PS51514PRIDE:F4JVE8PRINTS:PR00633PROSITE:PS00626
PROSITE:PS50012PROSITE:PS50178PROSITE:PS51514ProteinModelPortal:F4JVE8
Proteomes:UP000006548RefSeq:NP_001154232.2scanprosite:PS00626SMART:SM00064
SMR:F4JVE8STRING:3702.AT4G14368.1SUPFAM:SSF50729SUPFAM:SSF50985
SUPFAM:SSF57903TAIR:AT4G14368UniGene:At.74643UniProt:F4JVE8
Coordinates (TAIR10) chr4:-:8274279..8278810
Molecular Weight (calculated) 121380.00 Da
IEP (calculated) 9.51
GRAVY (calculated) -0.42
Length 1106 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKTDGMADPS SYVNHDRDID QALVSLKKGT QLLKYSRKGR PKFRSFRLSP DETTLFWLSH GEEKGLKLAT VSRILPGQRT AVFRRYLRPE KDYLSFSLIY
0101: HNGDRSLDLI CKDKAETEVW FAGLKSLIRQ NRNKQAKSEI PEVSIHDSDC FSTGRPSTAS IDFAPNNTRR GRTSIDLGIQ NSPTKFGSSD VGYERGNMLR
0201: PSTDGFRISV SSTPSCSTGT SGPDDIESLG DVYVWGEVWS DGISPDGVVN STTVKIDVLI PKPLESNVVL DVHQIACGVR HIALVTRQGE VFTWEEEAGG
0301: RLGHGIQVDV CRPKLVEFLA LTNIDFVACG EYHTCAVSTS GDLFTWGDGI HNVGLLGHGS DLSHWIPKRV SGPVEGLQVL SVACGTWHSA LATANGKLFT
0401: FGDGAFGVLG HGDRESVSYP KEVKMLSGLK TLKVACGVWH TVAIVEVMNQ TGTSTSSRKL FTWGDGDKNR LGHGNKETYL LPTCVSSLID YNFNQIACGH
0501: TFTVALTTSG HVFTMGGTSH GQLGSSNSDG KLPCLVQDRL VGEFVEEISC GDHHVAVLTS RSEVFTWGKG SNGRLGHGDK DDRKTPTLVE ALRERHVKSI
0601: SCGSNFTSSI CIHKWVSGAD QSVCSGCRQA FGFTRKRHNC YNCGLVHCHA CSSKKALKAA LAPTPGKPHR VCDACYTKLK AGESGYNSNV ANRNSTTPTR
0701: SLDGTGRPDR DIRSSRILLS PKTEPVKYSE VRSSRSESSI VRASQVPALQ QLRDVAFPSS LSAIQNAFKP VASSSTSTLP SGTRSSRISS PPRSSGFSRG
0801: MIDTLKKSNG VINKEMTKLQ SQIKNLKEKC DNQGTEIQRL KKTAREASDL AVKHSSKHKA ATEVMKSVAE HLRELKEKLP PEVSRCEAFE SMNSQAEAYL
0901: NASEASESCL PTTSLGMGQR DPTPSTNTQD QNIEEKQSSN GGNMRSQEPS GTTEASSSSK GGGKELIEQF EPGVYVTYVL HKNGGKIFRR VRFSFFVANG
1001: DLMSIKQKNG GIAKKIGCLR GIVIMLHHRV QRLLIQFQHQ LNLNHQLLIQ FLHQLNLNHQ LLIQFLHQLN LNHQLLLHNR ILIKQRIQKK FLMKASHHVY
1101: NSSLAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)