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AT2G33100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cellulose synthase-like D1
Curator
Summary (TAIR10)
encodes a gene similar to cellulose synthase
Computational
Description (TAIR10)
cellulose synthase-like D1 (CSLD1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: pollen germination, plant-type cell wall biogenesis, polysaccharide biosynthetic process; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3587 Blast hits to 2817 proteins in 647 species: Archae - 12; Bacteria - 1535; Metazoa - 3; Fungi - 28; Plants - 1916; Viruses - 7; Other Eukaryotes - 86 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G33100-MONOMERCAZy:GT2EC:2.4.1.-eggNOG:COG1215
eggNOG:ENOG410IFVVEMBL:AC002334EMBL:AK175868EMBL:CP002685
EnsemblPlants:AT2G33100EnsemblPlants:AT2G33100.1entrez:817872ExpressionAtlas:O49323
GeneID:817872Genevisible:O49323GO:GO:0000139GO:GO:0009846
GO:GO:0016021GO:GO:0016760GO:GO:0030244GO:GO:0071555
Gramene:AT2G33100.1gramene_pathway:2.4.1.12gramene_pathway:PWY-1001gramene_plant_reactome:1119314
gramene_plant_reactome:6875373hmmpanther:PTHR13301hmmpanther:PTHR13301:SF35HOGENOM:HOG000241941
InParanoid:O49323InterPro:IPR005150InterPro:IPR029044KEGG:ath:AT2G33100
OMA:AMNARERPaxDb:O49323Pfam:O49323Pfam:PF03552
PhylomeDB:O49323PIR:D84741PRIDE:O49323PRO:PR:O49323
ProteinModelPortal:O49323Proteomes:UP000006548RefSeq:NP_180869.1SMR:O49323
STRING:3702.AT2G33100.1SUPFAM:SSF53448SwissPalm:O49323TAIR:AT2G33100
tair10-symbols:ATCSLD1tair10-symbols:CSLD1TMHMM:TMhelixUniGene:At.37976
UniProt:O49323UniProt:W8PVL4
Coordinates (TAIR10) chr2:-:14036494..14040044
Molecular Weight (calculated) 116073.00 Da
IEP (calculated) 7.90
GRAVY (calculated) -0.21
Length 1036 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSPPKKTL NSQSSSLSRP PQAVKFGRRT SSGRIVSLSR DDDMDVSGDY SGQNDYINYT VLMPPTPDNQ PAGSSGSTSE SKGDANRGGG GGDGPKMGNK
0101: LERRLSVMKS NNKSMLLRSQ TGDFDHNRWL FESKGKYGIG NAFWSEEDDT YDGGVSKSDF LDKPWKPLTR KVQIPAKILS PYRLLIVIRL VIVFFFLWWR
0201: ITNPNEDAMW LWGLSIVCEI WFAFSWILDI LPKLNPINRA TDLAALHDKF EQPSPSNPTG RSDLPGVDVF VSTADPEKEP PLVTANTLLS ILAVDYPIEK
0301: LSAYISDDGG AILTFEAMAE AVRFAEYWVP FCRKHDIEPR NPDSYFSIKK DPTKNKKRQD FVKDRRWIKR EYDEFKVRIN GLPEQIKKRA EQFNMREELK
0401: EKRIAREKNG GVLPPDGVEV VKATWMADGT HWPGTWFEPK PDHSKGDHAG ILQIMSKVPD LEPVMGGPNE GALDFTGIDI RVPMFAYVSR EKRPGFDHNK
0501: KAGAMNGMVR ASAILSNGAF ILNLDCDHYI YNSKAIKEGM CFMMDRGGDR ICYIQFPQRF EGIDPSDRYA NHNTVFFDGN MRALDGLQGP VYVGTGCMFR
0601: RYALYGFNPP RANEYSGVFG QEKAPAMHVR TQSQASQTSQ ASDLESDTQP LNDDPDLGLP KKFGNSTMFT DTIPVAEYQG RPLADHMSVK NGRPPGALLL
0701: PRPPLDAPTV AEAIAVISCW YEDNTEWGDR IGWIYGSVTE DVVTGYRMHN RGWRSVYCIT KRDAFRGTAP INLTDRLHQV LRWATGSVEI FFSKNNAMFA
0801: TRRLKFLQRV AYLNVGIYPF TSIFLVVYCF LPALCLFSGK FIVQSLDIHF LSYLLCITVT LTLISLLEVK WSGIGLEEWW RNEQFWLIGG TSAHLAAVVQ
0901: GLLKVIAGIE ISFTLTSKAS GEDEDDIFAD LYIVKWTGLF IMPLTIIIVN LVAIVIGASR TIYSVIPQWG KLMGGIFFSL WVLTHMYPFA KGLMGRRGKV
1001: PTIVYVWSGL VSITVSLLWI TISPPDDVSG SGGISV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)