AT2G05850.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : serine carboxypeptidase-like 38 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
serine carboxypeptidase-like 38 (scpl38); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 36 (TAIR:AT3G52000.1); Has 3643 Blast hits to 3575 proteins in 391 species: Archae - 0; Bacteria - 253; Metazoa - 637; Fungi - 855; Plants - 1461; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:2242774..2244460 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 54733.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.55 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 487 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGKQQDWSVT ACIFLSLSLA SQIHCSSQTH FPSHKGGAGL SGDTSHFNSV SRENVLSLKE KDLIEKLPGQ PSGISFRQYG GYVAVNEPAT RFLYYYFVEA 101: IKPSKSTPLV LWFNGGPGCS SVGFGAFEEL GPFRVHSDGK TLYRNPYSWN NEANMLFFEG PISVGFSYSS TPFDWEIFGE QADKLTAEDN YMFLVNWLER 201: FPEYKGRDVY ISGQSYAGHY IPQLAQIILH RNNQTFINLR GISIGNPGLD LLIEADNENK FILSHGLVSQ KDFEEYSKVC DFANYDMDEC PKIMPKFSIE 301: HNKHLDVYNI YAPVCLNSTL SSEPKKCTTI MEVDPCRSNY VKAYLNSENV QEAMHANTTK LPYEWKACNH YLNSVWIDAD KDASMVPILH DLMGEGVRVL 401: VYSGDVDAAI PFTATMAVLK TMNLTVVNEW RPWFTGGQLG GFTEDYERNL TYATVKGSGH SVPLDQPVHA LNLFTSFIRN TPLPQTP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)