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AT2G05850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 38
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 38 (scpl38); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 36 (TAIR:AT3G52000.1); Has 3643 Blast hits to 3575 proteins in 391 species: Archae - 0; Bacteria - 253; Metazoa - 637; Fungi - 855; Plants - 1461; Viruses - 0; Other Eukaryotes - 437 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G05850-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC005970EMBL:AY065440EMBL:BT000980EMBL:CP002685
EnsemblPlants:AT2G05850EnsemblPlants:AT2G05850.1entrez:815137ESTHER:arath-scp38
Gene3D:3.40.50.1820GeneID:815137Genevisible:Q9ZUG3GO:GO:0004185
GO:GO:0005576GO:GO:0051603Gramene:AT2G05850.1hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF66HOGENOM:HOG000198295InParanoid:Q9ZUG3InterPro:IPR001563
InterPro:IPR029058InterPro:IPR033124KEGG:ath:AT2G05850KO:K16297
MEROPS:S10.A29OMA:MHANTTKPANTHER:PTHR11802PaxDb:Q9ZUG3
Pfam:PF00450Pfam:Q9ZUG3PhylomeDB:Q9ZUG3PIR:B84472
PRIDE:Q9ZUG3PRINTS:PR00724PRO:PR:Q9ZUG3PROSITE:PS00560
ProteinModelPortal:Q9ZUG3Proteomes:UP000006548RefSeq:NP_178642.1scanprosite:PS00560
SMR:Q9ZUG3STRING:3702.AT2G05850.1SUPFAM:SSF53474TAIR:AT2G05850
tair10-symbols:scpl38UniGene:At.28482UniProt:Q9ZUG3
Coordinates (TAIR10) chr2:-:2242774..2244460
Molecular Weight (calculated) 54733.60 Da
IEP (calculated) 5.55
GRAVY (calculated) -0.28
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKQQDWSVT ACIFLSLSLA SQIHCSSQTH FPSHKGGAGL SGDTSHFNSV SRENVLSLKE KDLIEKLPGQ PSGISFRQYG GYVAVNEPAT RFLYYYFVEA
101: IKPSKSTPLV LWFNGGPGCS SVGFGAFEEL GPFRVHSDGK TLYRNPYSWN NEANMLFFEG PISVGFSYSS TPFDWEIFGE QADKLTAEDN YMFLVNWLER
201: FPEYKGRDVY ISGQSYAGHY IPQLAQIILH RNNQTFINLR GISIGNPGLD LLIEADNENK FILSHGLVSQ KDFEEYSKVC DFANYDMDEC PKIMPKFSIE
301: HNKHLDVYNI YAPVCLNSTL SSEPKKCTTI MEVDPCRSNY VKAYLNSENV QEAMHANTTK LPYEWKACNH YLNSVWIDAD KDASMVPILH DLMGEGVRVL
401: VYSGDVDAAI PFTATMAVLK TMNLTVVNEW RPWFTGGQLG GFTEDYERNL TYATVKGSGH SVPLDQPVHA LNLFTSFIRN TPLPQTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)