AT3G28810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28820.1); Has 15669 Blast hits to 5639 proteins in 846 species: Archae - 30; Bacteria - 3404; Metazoa - 2488; Fungi - 1652; Plants - 304; Viruses - 103; Other Eukaryotes - 7688 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:10822471..10823941 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47875.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||
| Length | 434 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARVQLFLCF TILFASVTLL DIVSAHLKLK PTLPQIEPPQ TLKDVEPYTV KVVIVFVSDL EKECPKTNKF KAFFEKLRAF AKYVCPIKRK DQVDYDRDMK 101: AKAGGLFQVI SSFAIGKIKK EIQEDKMEVI NTFKFMRFLA TKIVGSRKKE ESEESMKLTA EQQKEIKEGI LRWETIITRI TNTMVSSTTN SASSNEESSV 201: GKEASSENSK SSGKESESSA KGESETSAKG ESKTSAKGES ETSSSKSAGG SSTSATKEES SASQSSGVTV TQVEEETSKD VSTFIMNLEK KCPQKEEYKV 301: FFEQLKGTMI APPKERKGLF SRIKSAAGKL SGAMGVMRSR IGSKSAEVKK SMETYQEQVM KTLQELDTIH SQIVSQNQGK KEGSLTCTPA QQTQIKTTIT 401: KWEQVTTQFV ETAIQSETKS SSTTSSSVGK MNTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)