AT5G27870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G05610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9878991..9881806 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78480.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 732 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSYGYDDEDA KRKKRYVIIS ISSVLLISMV VAVTIGVSVN KSDNAGDEEI TTSVKAIKDV CAPTDYKETC EDTLRKDAKD TSDPLELVKT AFNATMKQIS 101: DVAKKSQTMI ELQKDPRAKM ALDQCKELMD YAIGELSKSF EELGKFEFHK VDEALVKLRI WLSATISHEQ TCLDGFQGTQ GNAGETIKKA LKTAVQLTHN 201: GLAMVTEMSN YLGQMQIPEM NSRRLLSQEF PSWMDARARR LLNAPMSEVK PDIVVAQDGS GQYKTINEAL NFVPKKKNTT FVVHIKEGIY KEYVQVNRSM 301: THLVFIGDGP DKTVISGSKS YKDGITTYKT ATVAIVGDHF IAKNIAFENT AGAIKHQAVA IRVLADESIF YNCKFDGYQD TLYAHSHRQF YRDCTISGTI 401: DFLFGDAAAV FQNCTLLVRK PLLNQACPIT AHGRKDPRES TGFVLQGCTI VGEPDYLAVK EQSKTYLGRP WKEYSRTIIM NTFIPDFVPP EGWQPWLGEF 501: GLNTLFYSEV QNTGPGAAIT KRVTWPGIKK LSDEEILKFT PAQYIQGDAW IPGKGVPYIL GLFSGNGSTN STVTGSSLSS NTTESSDSPS TVVTPSTSPP 601: AGHLGSPSDT PSSVVSPSTS LPAGQLGAPP ATPSMVVSPS TSPPAGHLGS PSDTPSSLVS PSTSPPAGHL GSPSDTPSSV VTPSASPSTS PSASPSVSPS 701: AFPSASPSAS PSASPSVSPS ASPSASPQSS IG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)