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AT1G30710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G34575.1); Has 4130 Blast hits to 4048 proteins in 606 species: Archae - 32; Bacteria - 1677; Metazoa - 0; Fungi - 1597; Plants - 684; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30710-MONOMEReggNOG:COG0277eggNOG:ENOG410J46FEMBL:AC007060
EMBL:BT033024EMBL:CP002684EnsemblPlants:AT1G30710EnsemblPlants:AT1G30710.1
entrez:839951Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:839951
GO:GO:0016614GO:GO:0050660Gramene:AT1G30710.1hmmpanther:PTHR32448
hmmpanther:PTHR32448:SF16HOGENOM:HOG000238933InterPro:IPR006094InterPro:IPR012951
InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169KEGG:ath:AT1G30710
OMA:CINGIANPfam:PF01565Pfam:PF08031Pfscan:PS51387
PhylomeDB:Q9SA86PIR:F86432PROSITE:PS51387Proteomes:UP000006548
RefSeq:NP_174358.1SMR:Q9SA86STRING:3702.AT1G30710.1SUPFAM:SSF56176
TAIR:AT1G30710UniGene:At.40498UniProt:Q9SA86
Coordinates (TAIR10) chr1:+:10895280..10896875
Molecular Weight (calculated) 59333.60 Da
IEP (calculated) 9.30
GRAVY (calculated) -0.13
Length 531 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSLTTQTLI ITIFLLTIPT SFASPPSLED VFAQCVTDFK PSNPKSPIQN YIYTQRSPNF LTILNNYVRN LRYFNNMTRK PVAIVAAADV THIQATITCA
101: KKLGLQLRIR SGGHDYDGMS YLSTIDFVVL DMFNLRSINI DPKLDTAWVQ SGATLGEIYY GVANKSNDLR GFPAGICPGL GAGGHFSGGG YGNMMRKYGL
201: SIDNIIDAKI VDAKGRVLDR SSMGEDLFWA LRGGGAASFC VVLAWKIKLV PVPAKVTVFN IETFGNTGSV NTTELVAKWQ EIADKIDNDL FIRLTLGSSN
301: KTVKASFMGM YLGNSSNLLE IMNAKFPELG LIKRECIEMK WIESVLFWLG IPPGTAPTTS MLNRIPQKQI YLKRKSDYVQ KPISRTGLES IFKIMTENEN
401: VTMAFNPYGG RMSEIPSTET AFPHRAGNMF KIQYAANWFV PGEAVAKDCL SQTERLFEAM SPYVSKNPRE AFLNYRDVDI GKSLNSTYEE GKVYGFKYFK
501: DNFEKLVKIK SRVDPDNFFR YEQSIPVLSS H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)