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AT5G20390.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 5 (TAIR:AT5G20340.1); Has 2108 Blast hits to 2093 proteins in 124 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 2096; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G20390-MONOMERCAZy:GH17eggNOG:ENOG410IVTJeggNOG:ENOG410YFZD
EMBL:AY065376EMBL:AY096541EMBL:CP002688EnsemblPlants:AT5G20390
EnsemblPlants:AT5G20390.1entrez:832161Gene3D:3.20.20.80GeneID:832161
GO:GO:0004553GO:GO:0005975Gramene:AT5G20390.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF103HOGENOM:HOG000238220InterPro:IPR000490InterPro:IPR013781
InterPro:IPR017853KEGG:ath:AT5G20390OMA:EEAVNTWPfam:PF00332
PhylomeDB:Q8VZ16PROSITE:PS00587Proteomes:UP000006548RefSeq:NP_197539.1
scanprosite:PS00587SMR:Q8VZ16STRING:3702.AT5G20390.1SUPFAM:SSF51445
TAIR:AT5G20390TMHMM:TMhelixUniGene:At.28510UniProt:Q8VZ16
Coordinates (TAIR10) chr5:-:6892982..6894016
Molecular Weight (calculated) 37966.60 Da
IEP (calculated) 4.72
GRAVY (calculated) 0.04
Length 344 amino acids
Sequence (TAIR10)
(BLAST)
001: MDCHRKTFLL KFLCVAFLLN YSNVGFVDAA TNIGLNYGLL GDNLPPPSEV INLYKSLSVT NIRIFDTTTD VLNAFRGNRN IGVMVDVKNQ DLEALSVSEE
101: AVNTWFVTNI EPYLADVNIT FIAVGNEVIP GEIGSYVLPV MKSLTNIVKS RSLPILISTT VAMTNLGQSY PPSAGDFMPQ AREQLTPVLK FLSQTNTPIL
201: VNIYPYFAYA ADPINIQLDY AIFNTNKVVV QDGPLGYTNM FDVIFDAFVW AMEKEGVKDL PMVVTETGWP SAGNGNLTTP DIASIYNTNF VKHVESGKGT
301: PKRPKSGISG FLFATFNENQ KPAGTEQNFG LYNPTDMKPI YKMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)