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AT1G72840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.562
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: ovule, embryo, sperm cell, root, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G09430.1); Has 23413 Blast hits to 17312 proteins in 691 species: Archae - 12; Bacteria - 1355; Metazoa - 2695; Fungi - 176; Plants - 18489; Viruses - 0; Other Eukaryotes - 686 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5224eggNOG:KOG1561EMBL:AK228810EMBL:CP002684
EnsemblPlants:AT1G72840EnsemblPlants:AT1G72840.1entrez:843615ExpressionAtlas:Q0WQ93
Gene3D:3.40.50.10140Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:843615
GO:GO:0007165GO:GO:0043531Gramene:AT1G72840.1hmmpanther:PTHR11017
hmmpanther:PTHR11017:SF169HOGENOM:HOG000064702InterPro:IPR000157InterPro:IPR002182
InterPro:IPR011713InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104
PhylomeDB:Q0WQ93PROSITE:PS50104Proteomes:UP000006548RefSeq:NP_177427.2
SMART:SM00255SMR:Q0WQ93STRING:3702.AT1G72840.2SUPFAM:SSF46785
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT1G72840
UniGene:At.35057UniProt:Q0WQ93
Coordinates (TAIR10) chr1:-:27410020..27413485
Molecular Weight (calculated) 117679.00 Da
IEP (calculated) 6.53
GRAVY (calculated) -0.03
Length 1042 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSSAT RLRHYDVFLS FRGVDTRQTI VSHLYVALRN NGVLTFKDDR KLEIGDTIAD GLVKAIQTSW FAVVILSENY ATSTWCLEEL RLIMQLHSEE
0101: QIKVLPIFYG VKPSDVRYQE GSFATAFQRY EADPEMEEKV SKWRRALTQV ANLSGKHSRN CVDEADMIAE VVGGISSRLP RMKSTDLINL VGMEAHMMKM
0201: TLLLNIGCED EVHMIGIWGM GGIGKSTIAK CLYDRFSRQF PAHCFLENVS KGYDIKHLQK ELLSHILYDE DVELWSMEAG SQEIKERLGH QKVFVVLDNV
0301: DKVEQLHGLA KDPSWFGPGS RIIITTRDKG LLNSCGVNNI YEVKCLDDKD ALQVFKKLAF GGRPPSDGFE QLFIRASRLA HGLPSALVAF ASHLSAIVAI
0401: DEWEDELALL ETFPQKNVQE ILRASYDGLD QYDKTVFLHV ACFFNGGHLR YIRAFLKNCD ARINHLAAKC LVNISIDGCI SMHILLVQTG REIVRQESDW
0501: RPSKQRFLWD PTEIHYVLDS NTGTRRVEGL SLHLCEMADT LLLRNSVFGP MHNLTFLKFF QHLGGNVSNL QLISDDYVLS RNLKLLHWDA YPLTILPPIF
0601: RPHTIIELSL RYSKLNSLWD GTKLLPNLRI LDVTGSRNLR ELPELSTAVN LEELILESCT SLVQIPESIN RLYLRKLNMM YCDGLEGVIL VNDLQEASLS
0701: RWGLKRIILN LPHSGATLSS LTDLAIQGKI FIKLSGLSGT GDHLSFSSVQ KTAHQSVTHL LNSGFFGLKS LDIKRFSYRL DPVNFSCLSF ADFPCLTELK
0801: LINLNIEDIP EDICQLQLLE TLDLGGNDFV YLPTSMGQLA MLKYLSLSNC RRLKALPQLS QVERLVLSGC VKLGSLMGIL GAGRYNLLDF CVEKCKSLGS
0901: LMGILSVEKS APGRNELLEL SLENCKSLVS LSEELSHFTK LTYLDLSSLE FRRIPTSIRE LSFMRTLYLN NCNKIFSLTD LPESLKYLYA HGCESLEHVN
1001: FSSNHSFNHL DFSHCISLEC ISDLVRDFMN EEYSQEVRLS SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)